CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014786.1-P	Field mustard	cytosol	100.0	43.86
CDY02892	Canola	cytosol	99.37	43.59
CDX73448	Canola	cytosol	90.25	39.75
CDX78263	Canola	cytosol	90.25	39.75
CDX67608	Canola	cytosol	89.31	39.34
CDY07523	Canola	cytosol	89.31	39.34
AT3G54800.1	Thale cress	cytosol	88.05	38.2
Solyc04g025280.2.1	Tomato	cytosol	63.84	34.76
CDY41767	Canola	extracellular, golgi	10.06	33.68
CDY04553	Canola	cytosol	67.3	29.27
CDX71361	Canola	cytosol	67.3	29.2
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	26.42	27.72
CDX78399	Canola	nucleus, plastid	26.1	27.39
CDX88150	Canola	cytosol	21.7	24.47
CDY47711	Canola	cytosol	23.58	24.35
CDY05382	Canola	cytosol	19.81	23.42
CDX80479	Canola	cytoskeleton, cytosol, nucleus	20.44	22.18
CDX88148	Canola	cytosol	17.92	21.59
CDX80480	Canola	cytosol	13.21	20.49
CDY13045	Canola	mitochondrion	33.65	14.9
CDY23114	Canola	mitochondrion	33.65	14.9
CDX99399	Canola	mitochondrion	33.33	14.76
CDY01578	Canola	mitochondrion	33.02	14.66
CDX78916	Canola	mitochondrion	33.02	14.62
CDX98603	Canola	mitochondrion	33.02	14.62
CDY10168	Canola	nucleus	23.27	13.12
CDY58454	Canola	cytosol	31.13	12.92
CDY41766	Canola	nucleus	31.45	12.76
CDY69875	Canola	cytosol	17.3	11.9
CDX98605	Canola	cytosol	0.31	0.22
CDY47710	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY64695	EnsemblPlantsGene:GSBRNA2T00042563001	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF86	PFAM:PF07059
ProteinID:CDY64695	ProteinID:CDY64695.1	SEG:seg	UniParc:UPI0004EDF7A9	UniProt:A0A078JE10	MapMan:35.1

Description

BnaA04g27680DBnaA04g27680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE10]

Coordinates

chrLK034524:-:5096..6648

Molecular Weight (calculated)

35336.2 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.268

Length

318 amino acids

Sequence
(BLAST)

001: MEKPSSARNS LMDLNDASDE FFDVPEPNES YEFDSLIDNS PFSQGHSQLK LPSPSGIVKK LQDLANNKKG YMDLQEVGMD VNSTFIYGAT LQQDPNLTMP
101: CSWSIADPST FLIRGDNYLN DQQKVKANGT MMQMVGADWI SSDKREDDLG GRLGGLVQEF AAKGGPEFFF IVNMQVPGSA MISLALYYML KTPLEEHPLL
201: HSFVNGDDAY RNSRFKLIPH ISKGSWIVKQ SVGKKACLVG HALEVRYTRG KNYLELDIDV GSSTVARGVT NLVLGYLNNL VIEMAFLIQA NTAEELPELL
301: LGTCRLNYLD VSKSLKER

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.