Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64695 | Canola | cytosol, golgi, nucleus | 43.59 | 99.37 |
| CDY69875 | Canola | cytosol | 63.03 | 98.92 |
| CDX73448 | Canola | cytosol | 90.48 | 90.86 |
| CDX78263 | Canola | cytosol | 90.21 | 90.58 |
| CDY07523 | Canola | cytosol | 89.52 | 89.89 |
| CDX67608 | Canola | cytosol | 89.24 | 89.61 |
| AT3G54800.1 | Thale cress | cytosol | 88.55 | 87.59 |
| CDY04553 | Canola | cytosol | 62.48 | 61.97 |
| CDX71361 | Canola | cytosol | 62.48 | 61.8 |
| Solyc04g025280.2.1 | Tomato | cytosol | 49.38 | 61.3 |
| CDY41767 | Canola | extracellular, golgi | 4.69 | 35.79 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.69 | 30.36 |
| CDX78399 | Canola | nucleus, plastid | 12.55 | 30.03 |
| CDY13045 | Canola | mitochondrion | 29.24 | 29.53 |
| CDY23114 | Canola | mitochondrion | 29.24 | 29.53 |
| CDX99399 | Canola | mitochondrion | 28.97 | 29.25 |
| CDX78916 | Canola | mitochondrion | 28.83 | 29.11 |
| CDX98603 | Canola | mitochondrion | 28.83 | 29.11 |
| CDY01578 | Canola | mitochondrion | 28.69 | 29.05 |
| CDX88150 | Canola | cytosol | 10.48 | 26.95 |
| CDY05382 | Canola | cytosol | 9.79 | 26.39 |
| CDY47711 | Canola | cytosol | 10.9 | 25.65 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 9.79 | 24.23 |
| CDX80480 | Canola | cytosol | 6.76 | 23.9 |
| CDX88148 | Canola | cytosol | 8.69 | 23.86 |
| CDY58454 | Canola | cytosol | 24.69 | 23.37 |
| CDY41766 | Canola | nucleus | 24.69 | 22.83 |
| CDY10168 | Canola | nucleus | 10.9 | 14.01 |
| CDX98605 | Canola | cytosol | 1.79 | 2.82 |
| CDY47710 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.29.30 | Gene3D:3.30.530.20 | MapMan:35.1 | GO:A0A078EP61 | EnsemblPlants:CDY02892 | ProteinID:CDY02892 |
| ProteinID:CDY02892.1 | InterPro:EDR2_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | EnsemblPlantsGene:GSBRNA2T00115121001 |
| InterPro:IPR001849 | InterPro:IPR002913 | InterPro:IPR011993 | InterPro:IPR023393 | PFAM:PF00169 | PFAM:PF01852 |
| PFAM:PF07059 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PFscan:PS50003 | PFscan:PS50848 | PANTHER:PTHR12136 |
| PANTHER:PTHR12136:SF86 | SMART:SM00233 | SMART:SM00234 | SUPFAM:SSF50729 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | UniParc:UPI0004EDE0FB | SEG:seg | : | : | : |
Description
BnaC04g25940D
Coordinates
chrLK031938:+:126389..130682
Molecular Weight (calculated)
82704.9 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.416
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMPQIDGRM EGWLYTIRHN RFGLQFSRKR YFVLHDNNLT SFKSVPSDQN EEPDRRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKKFPF PDCEFVSHAE KGLVKFNVSR RSRRKNSVDW TNYSSVNVET IAPDVIAPSP WKIFGCQNGL RLFKEAKDWD SRGRHWDDHP
201: AIMAVGVIDG TSEDIFNTLM SLGPLRSEWD FCFYKGSVVE HLDGHTDIVN IQLYSDWLPW LMNRRDVLLR RYWRREEDGT YVILCHSVYH KKCPPTKGYV
301: RACLKSGGYV VTPVNKGKQS LVKHMVAIDW RSWNLYMRPS SERSITIRVV ERLAALREMF KAKQGHGFAE FVSGEFMQTK SSLSKINTLP FKKEAKRIDL
401: ELVKVEEMEK PSSARNSLMD LNDASDEFFD VPEPNESYEF DSLIENSPFS QGHSQLKLPS PSGIVKKLQD LANNKKGYMD LQEVGMDVNS TFIYGATLQQ
501: DPNLTMPCSW SIADPSTFLI RGDNYLNDQQ KVKANGTMMQ MVGADWISSD KREDDLGGRL GGLVQEFGAK GGPEFFFIVN MQVPGSAMIS LALYYMLKTP
601: LEEHPLLHSF VNGDDAYRNS RFKLIPHISK GSWIVKQSVG KKACLVGHAL EVRYTRGKNY LELDIDVGSS TVARGVTNLV LGYLNNLVIE MAFLIQANTA
701: EELPELLLGT CRLNYLDVSK SLKER
101: EEAAKWIRSL QDASQKKFPF PDCEFVSHAE KGLVKFNVSR RSRRKNSVDW TNYSSVNVET IAPDVIAPSP WKIFGCQNGL RLFKEAKDWD SRGRHWDDHP
201: AIMAVGVIDG TSEDIFNTLM SLGPLRSEWD FCFYKGSVVE HLDGHTDIVN IQLYSDWLPW LMNRRDVLLR RYWRREEDGT YVILCHSVYH KKCPPTKGYV
301: RACLKSGGYV VTPVNKGKQS LVKHMVAIDW RSWNLYMRPS SERSITIRVV ERLAALREMF KAKQGHGFAE FVSGEFMQTK SSLSKINTLP FKKEAKRIDL
401: ELVKVEEMEK PSSARNSLMD LNDASDEFFD VPEPNESYEF DSLIENSPFS QGHSQLKLPS PSGIVKKLQD LANNKKGYMD LQEVGMDVNS TFIYGATLQQ
501: DPNLTMPCSW SIADPSTFLI RGDNYLNDQQ KVKANGTMMQ MVGADWISSD KREDDLGGRL GGLVQEFGAK GGPEFFFIVN MQVPGSAMIS LALYYMLKTP
601: LEEHPLLHSF VNGDDAYRNS RFKLIPHISK GSWIVKQSVG KKACLVGHAL EVRYTRGKNY LELDIDVGSS TVARGVTNLV LGYLNNLVIE MAFLIQANTA
701: EELPELLLGT CRLNYLDVSK SLKER
001: MGVSQTDGRM EGWLYTIRHN RFGLQFSRKR YFVLHENNLT SFKSVPSDHN EEPERRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
Arabidopsis Description
AT3G54800 protein [Source:UniProtKB/TrEMBL;Acc:B9DGX7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.