Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67608 | Canola | cytosol | 98.2 | 98.2 |
| CDX73448 | Canola | cytosol | 90.3 | 90.3 |
| CDX78263 | Canola | cytosol | 89.89 | 89.89 |
| CDY69875 | Canola | cytosol | 57.34 | 89.61 |
| CDY02892 | Canola | cytosol | 89.89 | 89.52 |
| CDY64695 | Canola | cytosol, golgi, nucleus | 39.34 | 89.31 |
| AT3G54800.1 | Thale cress | cytosol | 88.92 | 87.59 |
| CDY04553 | Canola | cytosol | 62.74 | 61.97 |
| CDX71361 | Canola | cytosol | 62.6 | 61.66 |
| Solyc04g025280.2.1 | Tomato | cytosol | 49.03 | 60.62 |
| CDY41767 | Canola | extracellular, golgi | 5.12 | 38.95 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.02 | 31.02 |
| CDX78399 | Canola | nucleus, plastid | 12.88 | 30.69 |
| CDX99399 | Canola | mitochondrion | 29.5 | 29.67 |
| CDX98603 | Canola | mitochondrion | 29.36 | 29.53 |
| CDX78916 | Canola | mitochondrion | 29.36 | 29.53 |
| CDY13045 | Canola | mitochondrion | 29.22 | 29.39 |
| CDY23114 | Canola | mitochondrion | 29.22 | 29.39 |
| CDY01578 | Canola | mitochondrion | 29.09 | 29.33 |
| CDY05382 | Canola | cytosol | 10.66 | 28.62 |
| CDX88150 | Canola | cytosol | 10.66 | 27.3 |
| CDY47711 | Canola | cytosol | 11.63 | 27.27 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 10.39 | 25.6 |
| CDX88148 | Canola | cytosol | 9.28 | 25.38 |
| CDX80480 | Canola | cytosol | 7.2 | 25.37 |
| CDY58454 | Canola | cytosol | 25.21 | 23.76 |
| CDY41766 | Canola | nucleus | 25.21 | 23.21 |
| CDY10168 | Canola | nucleus | 11.77 | 15.07 |
| CDX98605 | Canola | cytosol | 1.52 | 2.39 |
| CDY47710 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.29.30 | Gene3D:3.30.530.20 | MapMan:35.1 | GO:A0A078F7E2 | UniProt:A0A078F7E2 | EnsemblPlants:CDY07523 |
| ProteinID:CDY07523 | ProteinID:CDY07523.1 | InterPro:EDR2_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| EnsemblPlantsGene:GSBRNA2T00124570001 | InterPro:IPR001849 | InterPro:IPR002913 | InterPro:IPR011993 | InterPro:IPR023393 | PFAM:PF00169 |
| PFAM:PF01852 | PFAM:PF07059 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PFscan:PS50003 | PFscan:PS50848 |
| PANTHER:PTHR12136 | PANTHER:PTHR12136:SF86 | SMART:SM00233 | SMART:SM00234 | SUPFAM:SSF50729 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EDCD32 | SEG:seg | : | : |
Description
BnaC06g15410DBnaC06g15410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7E2]
Coordinates
chrLK031979:-:350349..354303
Molecular Weight (calculated)
82355.4 Da
IEP (calculated)
8.025
GRAVY (calculated)
-0.407
Length
722 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMSQTDGRM EGWLYTIRHN RFGLQFSRKR YFLLLDNNLK SFRSVPSDHN EEPDRRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKGFPF PDCEFVSHAE KGLVKLDLSK RTRRKVSVDW TNYSSLNVET IAPDVIAPSP WKIFGCQNGL RLFKEAKDWD SRGKHWDDHP
201: AVMAVGVIDG TSEDIFNTLM SLDPLRSEWD FCFYKGSVVE HLDGHTDIIN VQLYSDWLPW GMNRRDLLLR RYWRREEDGT YVILCHSVYH KKCPPRRGYV
301: RACVKSGGYV VAPVSKGKQS LVKHMVAIDW RSWNLYMRPS SSRSITIRVV ERLAALREMF KAKQGHGFAE FVSGEFLETK SCLSKVNIRP LITEAKRVDL
401: ELVKADEMEK PSSARHSLMD LNNVSDEFFD VPEPSEFDSL IDNSPFSQGH SQLKIPSPAG IVKKLQDLAN NKKGYMDLQE VGMDDKSTFF YGATLQKDPN
501: LTMPCSWATA DPSTFLIRGE NYLKDRQKVK ANETLMQMIG ADWISSNKRE DDLGGRLGGL VQEYAAKGGP EFFFIVNMQV PGSAMYSLAL YYMLKTPLEE
601: HPLIESFVNG DDAYRNSRFK LIPHISKGSW IVKQSVGKKA CLVGQALEVR YTRGKNYFEL DVDVGSSTVA RGVTNLVLGY LTNLVIEMAF LIQANTENEL
701: PELLLGTCRL NYLDVSKSVQ ER
101: EEAAKWIRSL QDASQKGFPF PDCEFVSHAE KGLVKLDLSK RTRRKVSVDW TNYSSLNVET IAPDVIAPSP WKIFGCQNGL RLFKEAKDWD SRGKHWDDHP
201: AVMAVGVIDG TSEDIFNTLM SLDPLRSEWD FCFYKGSVVE HLDGHTDIIN VQLYSDWLPW GMNRRDLLLR RYWRREEDGT YVILCHSVYH KKCPPRRGYV
301: RACVKSGGYV VAPVSKGKQS LVKHMVAIDW RSWNLYMRPS SSRSITIRVV ERLAALREMF KAKQGHGFAE FVSGEFLETK SCLSKVNIRP LITEAKRVDL
401: ELVKADEMEK PSSARHSLMD LNNVSDEFFD VPEPSEFDSL IDNSPFSQGH SQLKIPSPAG IVKKLQDLAN NKKGYMDLQE VGMDDKSTFF YGATLQKDPN
501: LTMPCSWATA DPSTFLIRGE NYLKDRQKVK ANETLMQMIG ADWISSNKRE DDLGGRLGGL VQEYAAKGGP EFFFIVNMQV PGSAMYSLAL YYMLKTPLEE
601: HPLIESFVNG DDAYRNSRFK LIPHISKGSW IVKQSVGKKA CLVGQALEVR YTRGKNYFEL DVDVGSSTVA RGVTNLVLGY LTNLVIEMAF LIQANTENEL
701: PELLLGTCRL NYLDVSKSVQ ER
001: MGVSQTDGRM EGWLYTIRHN RFGLQFSRKR YFVLHENNLT SFKSVPSDHN EEPERRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
Arabidopsis Description
AT3G54800 protein [Source:UniProtKB/TrEMBL;Acc:B9DGX7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.