CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038938.1-P	Field mustard	nucleus	98.96	98.44
CDY41766	Canola	nucleus	98.3	96.05
AT5G35180.4	Thale cress	cytosol	90.47	85.45
CDY41767	Canola	extracellular, golgi	10.44	84.21
KRH03545	Soybean	nucleus	67.49	69.58
KRH20109	Soybean	cytosol, nucleus	67.49	69.21
Solyc07g005000.2.1	Tomato	cytosol	64.62	65.74
KRH12970	Soybean	cytosol	60.84	63.66
Zm00001d032166_P003	Maize	endoplasmic reticulum, plasma membrane	30.42	62.8
EES13904	Sorghum	plastid	61.23	61.23
GSMUA_Achr9P13170_001	Banana	nucleus	58.49	59.65
Os08t0439100-01	Rice	plasma membrane	58.88	59.11
HORVU5Hr1G053070.9	Barley	cytosol, nucleus	57.7	58.31
TraesCS5A01G173000.1	Wheat	cytosol	57.44	58.12
TraesCS5B01G170400.1	Wheat	cytosol	57.05	57.65
TraesCS5D01G177500.2	Wheat	cytosol	57.31	57.61
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	14.1	35.64
CDX78399	Canola	nucleus, plastid	13.97	35.31
CDY47711	Canola	cytosol	13.19	32.79
CDY05382	Canola	cytosol	11.36	32.34
CDX88150	Canola	cytosol	11.49	31.21
CDY64695	Canola	cytosol, golgi, nucleus	12.92	31.13
CDX80479	Canola	cytoskeleton, cytosol, nucleus	11.75	30.72
CDX88148	Canola	cytosol	10.31	29.92
CDX99399	Canola	mitochondrion	27.42	29.25
CDY23114	Canola	mitochondrion	27.42	29.25
CDX78916	Canola	mitochondrion	27.42	29.25
CDY13045	Canola	mitochondrion	27.28	29.11
CDY01578	Canola	mitochondrion	27.15	29.05
CDX98603	Canola	mitochondrion	27.15	28.97
CDX80480	Canola	cytosol	7.7	28.78
CDY04553	Canola	cytosol	25.07	26.27
CDX71361	Canola	cytosol	25.07	26.19
CDX67608	Canola	cytosol	24.28	25.76
CDY07523	Canola	cytosol	23.76	25.21
CDY02892	Canola	cytosol	23.37	24.69
CDX78263	Canola	cytosol	22.72	24.1
CDX73448	Canola	cytosol	22.72	24.1
CDY69875	Canola	cytosol	10.84	17.97
CDY10168	Canola	nucleus	13.19	17.91
CDX98605	Canola	cytosol	1.83	3.04
CDY47710	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.1	GO:A0A078J5W1	UniProt:A0A078J5W1	EnsemblPlants:CDY58454	ProteinID:CDY58454
ProteinID:CDY58454.1	ncoils:Coil	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00023628001	InterPro:IPR002913	InterPro:IPR023393	PFAM:PF01852	PFAM:PF07059	PFscan:PS50848
PANTHER:PTHR12136	PANTHER:PTHR12136:SF49	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EDE102
SEG:seg	:	:	:	:	:

Description

BnaC08g47190DBnaC08g47190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5W1]

Coordinates

chrLK033669:+:39585..48044

Molecular Weight (calculated)

85850.9 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.484

Length

766 amino acids

Sequence
(BLAST)

001: MTSPGSKKVV PADGSEKNHS GNLGRTGDLN ESGSSSGGGE GGTFEYFGQV YHLGSNKIGH EYCHLRYLFI RGKYVEMYKR DPHENPDIKP IRRGVIGPTM
101: MVEELGRRKV SHGDVYVIRF SNRLDERKKG EIACATAGEA MKWVEAFDEA KQQAEYALSR GGSTRTKLSM EANIDLEGHR PRVRRYAYGL KKLIRIGQGP
201: ETLLRQSSTL VNDVRGDSFY GGGDNGDAIE AHEWKCVRTI NGVRIFEDVA NFKAGRGFLV KAVAVVEASA DAVFEVISKL DKHQRYEWDT VTGDSELIDS
301: YEGHYDVIYC VYDPKYLSRW QSKRDFIFSR QWVRGQDGTY TILQFPAVHK KRPPKSGYRR TDITPSTWEI RNLKKRSDAE PPSCLVTHML EIHSKRWCKW
401: KRTSYSKFEK TIPYALLLQV AGLKEYIGAN PAFKYEASST VVQSKLSDIP SGEYVEEEME EQFYDATDSS SDEEESDEDD EEQDKKEIKV KLKNVSWAIA
501: SLSLKQPKAP GASNELDTSV DPVDIDPSQI QGSLRKGNGD KDSNCWNSPS GMGFMIRGKT YLKDNAKVMG GQPLLTLVSV DWLKVDKAVD NIALHPKCLV
601: QSEPGKKLPF ILVINLQVPA KPNYCLVMYY AADRPVSESS SLGKFVNGSD SYRDSRFKLI PSIVQGYWMV KRAVGTKACL LGKAVTCKYL RKDNFLEIDV
701: DIGSSAVARS VIGLVLGYVT SLIVDLAILI EGKEETELPE YILGTVRLNR IELDSAVSFE VRDLTE

Best Arabidopsis Sequence Match ( AT5G35180.2 )
(BLAST)

001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEV

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.