CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03545	Soybean	nucleus	95.98	96.5
KRH12970	Soybean	cytosol	73.23	74.73
Solyc07g005000.2.1	Tomato	cytosol	69.75	69.19
CDY58454	Canola	cytosol	69.21	67.49
Bra038938.1-P	Field mustard	nucleus	69.08	67.01
CDY41767	Canola	extracellular, golgi	8.43	66.32
CDY41766	Canola	nucleus	69.34	66.07
Zm00001d032166_P003	Maize	endoplasmic reticulum, plasma membrane	32.8	66.04
EES13904	Sorghum	plastid	66.13	64.49
GSMUA_Achr9P13170_001	Banana	nucleus	64.39	64.05
AT5G35180.4	Thale cress	cytosol	68.81	63.38
Os08t0439100-01	Rice	plasma membrane	64.52	63.17
HORVU5Hr1G053070.9	Barley	cytosol, nucleus	63.59	62.66
TraesCS5A01G173000.1	Wheat	cytosol	62.78	61.96
TraesCS5B01G170400.1	Wheat	cytosol	62.52	61.61
TraesCS5D01G177500.2	Wheat	cytosol	62.78	61.55
KRG90499	Soybean	extracellular	4.42	45.21
KRH52302	Soybean	cytosol	13.92	35.99
KRH24608	Soybean	cytosol	14.59	35.16
KRH61636	Soybean	cytosol	13.65	34.34
KRH15692	Soybean	cytosol	13.25	33.22
KRH23216	Soybean	cytosol	9.5	32.13
KRH39650	Soybean	mitochondrion	29.32	30.17
KRH10121	Soybean	endoplasmic reticulum, golgi	14.06	29.91
KRH76356	Soybean	mitochondrion	28.65	29.44
KRH05337	Soybean	cytosol	10.58	29.15
KRH29613	Soybean	cytosol	11.24	28.38
KRH22877	Soybean	plastid	27.44	27.78
KRH08525	Soybean	cytosol	26.77	27.7
KRH34863	Soybean	cytosol, mitochondrion, nucleus, plastid	26.51	27.46
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	26.91	27.31

Protein Annotations

EntrezGene:100801191	Gene3D:3.30.530.20	MapMan:35.1	EMBL:ACUP02008239	InterPro:EDR2_C	EnsemblPlantsGene:GLYMA_13G156600
GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	UniProt:I1LZM9	InterPro:IPR002913	InterPro:IPR023393
ProteinID:KRH20108.1	EnsemblPlants:KRH20109	ProteinID:KRH20109	ProteinID:KRH20109.1	PFAM:PF01852	PFAM:PF07059
PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF49	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000233B220	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:27173454..27191595

Molecular Weight (calculated)

83496.2 Da

IEP (calculated)

7.437

GRAVY (calculated)

-0.386

Length

747 amino acids

Sequence
(BLAST)

001: MDAVATGSEL NKSGSGGSER SEDSGGAGGG GIFEYSGWVY HLGVNSIGHE YCHLRFLFIR GKYVSMYKRD PHDNPGLKPI RQGIVGPTLM VEELGRRKVN
101: NGDLYVLRFY NRLDETKKGE IACATAGDAR GWMEAFDQAK QQAEYELSRG VSARDKLNME AEINLEGHRP RVRRYAHGLR KLIRIGQGPE KLLRQSSKLA
201: VRPEGFAGDS GDAVEAHQWK CVLTMAGIRI FEDVSDHKNG KGVLAKSVGV IDATADTVFE VILSTEQQKR YEWDTLMCDL ELIDSYDGHY DVVYGTYDSK
301: YLSRWHSKQD FVFSRQWFRG QDGTYTILQF PAIHKKKPQR SGYRRAKVNP SSWEIRNLNT SMASKSPRCL VTHTLEIHSS SWCQWKNNKS SKFERSIPYA
401: LLCQVSGLKE YIAANPALHH ENGTTIVHSK LSDASISSAE YEDEMQDEFY DAITADSSTS DEESDDDQKL VLQEPRVKLK NISWAITTLA LKRTAAPDLT
501: EELDPHVTHI TIPSDLHGSL CKGKDDNDTN CWASPSGKGF MIRGKNYLKD SSKVVGGDPL LKLIAVDWFT VDKSADRISL HPKCLVQSEA GKKLPFILVI
601: NLQVPAKPNY SLVLYYAADR PINKNSLLAK FVDGSDAFRD SRFKLIPSIV EGYWMVKRAV GTKACLLGKA VTCKYFRQDN FLEIDVDIGS SSVARSVIGF
701: VLGYVTSLVV DLAILIEAKE EAELPEYILG TVRLNRLKLE SAVPLEV

Best Arabidopsis Sequence Match ( AT5G35180.2 )
(BLAST)

001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEV

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.