Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58454 | Canola | cytosol | 85.45 | 90.47 |
| Bra038938.1-P | Field mustard | nucleus | 85.33 | 89.87 |
| CDY41766 | Canola | nucleus | 86.56 | 89.54 |
| CDY41767 | Canola | extracellular, golgi | 8.88 | 75.79 |
| KRH03545 | Soybean | nucleus | 63.13 | 68.91 |
| KRH20109 | Soybean | cytosol, nucleus | 63.38 | 68.81 |
| Solyc07g005000.2.1 | Tomato | cytosol | 61.28 | 66.0 |
| KRH12970 | Soybean | cytosol | 58.2 | 64.48 |
| Zm00001d032166_P003 | Maize | endoplasmic reticulum, plasma membrane | 28.61 | 62.53 |
| EES13904 | Sorghum | plastid | 58.57 | 62.01 |
| GSMUA_Achr9P13170_001 | Banana | nucleus | 56.47 | 60.99 |
| Os08t0439100-01 | Rice | plasma membrane | 56.23 | 59.76 |
| HORVU5Hr1G053070.9 | Barley | cytosol, nucleus | 55.73 | 59.63 |
| TraesCS5A01G173000.1 | Wheat | cytosol | 55.49 | 59.45 |
| TraesCS5D01G177500.2 | Wheat | cytosol | 55.36 | 58.92 |
| TraesCS5B01G170400.1 | Wheat | cytosol | 54.99 | 58.84 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 12.58 | 33.77 |
| AT5G25010.1 | Thale cress | cytosol | 11.47 | 32.52 |
| AT1G06050.1 | Thale cress | cytosol | 12.45 | 32.27 |
| AT5G24990.1 | Thale cress | cytosol | 11.34 | 31.29 |
| AT5G25020.1 | Thale cress | cytosol | 10.36 | 31.23 |
| AT4G19040.2 | Thale cress | mitochondrion | 25.52 | 28.63 |
| AT5G45560.1 | Thale cress | mitochondrion | 25.28 | 28.51 |
| AT2G28320.1 | Thale cress | cytosol | 23.3 | 25.64 |
| AT3G54800.1 | Thale cress | cytosol | 21.82 | 24.15 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:833472 | ProteinID:AED93941.1 | ArrayExpress:AT5G35180 | EnsemblPlantsGene:AT5G35180 |
| RefSeq:AT5G35180 | TAIR:AT5G35180 | RefSeq:AT5G35180-TAIR-G | EnsemblPlants:AT5G35180.4 | TAIR:AT5G35180.4 | Unigene:At.27422 |
| ncoils:Coil | InterPro:EDR2_C | UniProt:F4JYC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008289 | GO:GO:0016020 | InterPro:IPR002913 | InterPro:IPR023393 |
| RefSeq:NP_001154747.1 | PFAM:PF01852 | PFAM:PF07059 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50848 | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF49 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | UniParc:UPI0001A7B250 | SEG:seg | : | : | : |
Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
Coordinates
chr5:+:13424418..13433018
Molecular Weight (calculated)
90937.2 Da
IEP (calculated)
8.311
GRAVY (calculated)
-0.418
Length
811 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINVIKRL FGKIVVLKRV RIFEDVANFK AGRGVLVKAV AVVEASADTV
301: FEVLLNIDKH QRYEWDAVTG DSEKIDSYEG HYDVIYCIYD PKYLSRWQSK RDFVFSRQWV RGQDGTYTIL QFPAVHKKRP AKSGYRRTEI TPRGSRVYLL
401: ACDYLPIRLC NTSTWEIKSL KKRSDAETPS CLVTHMLEIH SKRWCKWKRT SYSKFEKTIP YALLLQVAGL KEYIGANPAF KYETSATVVQ SKFQDVPNGE
501: YVDEEMEEQF YDATDSSSGE EDEEESDDDD ENQDNKEIKV KLKNVSWAIA SLSLKRPKAP GASNVLDASV DPVSIDPSQF QGSLRKGNGD KDSNCWNSPS
601: GMGFMIRGKT YLKDNAKVMG GQPLLTLISV DWFKVDSAVD NIALHPKCLI QSEPGKKLPF ILVINLQVPA KPNYCLVLYY AADRPVNKTS SLGKFVDGSD
701: SYRDARFKLI PSIVQGYWMV KRAVGTKACL LGKAVTCKYL RQDNFLEIDV DIGSSAVARS VIGLVLGYVT SLIVDLAILI EGKEESDLPE YILGTVRLNR
801: IELDSAVSFE E
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINVIKRL FGKIVVLKRV RIFEDVANFK AGRGVLVKAV AVVEASADTV
301: FEVLLNIDKH QRYEWDAVTG DSEKIDSYEG HYDVIYCIYD PKYLSRWQSK RDFVFSRQWV RGQDGTYTIL QFPAVHKKRP AKSGYRRTEI TPRGSRVYLL
401: ACDYLPIRLC NTSTWEIKSL KKRSDAETPS CLVTHMLEIH SKRWCKWKRT SYSKFEKTIP YALLLQVAGL KEYIGANPAF KYETSATVVQ SKFQDVPNGE
501: YVDEEMEEQF YDATDSSSGE EDEEESDDDD ENQDNKEIKV KLKNVSWAIA SLSLKRPKAP GASNVLDASV DPVSIDPSQF QGSLRKGNGD KDSNCWNSPS
601: GMGFMIRGKT YLKDNAKVMG GQPLLTLISV DWFKVDSAVD NIALHPKCLI QSEPGKKLPF ILVINLQVPA KPNYCLVLYY AADRPVNKTS SLGKFVDGSD
701: SYRDARFKLI PSIVQGYWMV KRAVGTKACL LGKAVTCKYL RQDNFLEIDV DIGSSAVARS VIGLVLGYVT SLIVDLAILI EGKEESDLPE YILGTVRLNR
801: IELDSAVSFE E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.