CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20109	Soybean	cytosol, nucleus	96.5	95.98
KRH12970	Soybean	cytosol	73.35	74.45
Solyc07g005000.2.1	Tomato	cytosol	69.18	68.26
CDY58454	Canola	cytosol	69.58	67.49
Bra038938.1-P	Field mustard	nucleus	69.45	67.01
CDY41766	Canola	nucleus	69.72	66.07
Zm00001d032166_P003	Maize	endoplasmic reticulum, plasma membrane	32.71	65.5
CDY41767	Canola	extracellular, golgi	8.34	65.26
GSMUA_Achr9P13170_001	Banana	nucleus	64.47	63.78
EES13904	Sorghum	plastid	65.68	63.71
AT5G35180.4	Thale cress	cytosol	68.91	63.13
Os08t0439100-01	Rice	plasma membrane	64.2	62.52
HORVU5Hr1G053070.9	Barley	cytosol, nucleus	63.26	62.01
TraesCS5A01G173000.1	Wheat	cytosol	62.58	61.43
TraesCS5D01G177500.2	Wheat	cytosol	62.58	61.02
TraesCS5B01G170400.1	Wheat	cytosol	62.18	60.95
KRG90499	Soybean	extracellular	4.71	47.95
KRH52302	Soybean	cytosol	13.86	35.64
KRH24608	Soybean	cytosol	14.54	34.84
KRH61636	Soybean	cytosol	13.59	34.01
KRH15692	Soybean	cytosol	13.19	32.89
KRH23216	Soybean	cytosol	9.42	31.67
KRH39650	Soybean	mitochondrion	29.88	30.58
KRH76356	Soybean	mitochondrion	29.34	29.99
KRH10121	Soybean	endoplasmic reticulum, golgi	14.0	29.63
KRH05337	Soybean	cytosol	10.5	28.78
KRH29613	Soybean	cytosol	11.17	28.04
KRH22877	Soybean	plastid	27.59	27.78
KRH08525	Soybean	cytosol	26.78	27.56
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	27.05	27.31
KRH34863	Soybean	cytosol, mitochondrion, nucleus, plastid	26.11	26.91

Protein Annotations

EntrezGene:100780025	Gene3D:3.30.530.20	MapMan:35.1	EMBL:ACUP02010352	InterPro:EDR2_C	EnsemblPlantsGene:GLYMA_17G104200
GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	UniProt:I1MTY2	InterPro:IPR002913	InterPro:IPR023393
EnsemblPlants:KRH03545	ProteinID:KRH03545	ProteinID:KRH03545.1	PFAM:PF01852	PFAM:PF07059	PFscan:PS50848
PANTHER:PTHR12136	PANTHER:PTHR12136:SF49	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000233DF35
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:8185783..8208021

Molecular Weight (calculated)

83243.0 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.371

Length

743 amino acids

Sequence
(BLAST)

001: MDAAATGSEL NKSGSGGSER SEDSGGGIFE YSGWVYHLGV NSIGHEYCHL RFLFIRGKYV SMYKRDPHDN PGLKPIRQGV VGPTLMVEEL GRRKVNNGDL
101: YVLRFFNRLD ETKKGEIACA TAGDARGWME AFDQAKQQAE YELSRGVSAR EKLNMEAEIN LEGHRPRVRR YAHGLRKLIR IGQGPEKLLR QSSKLAIRPD
201: GFEGDSGDAV EAHQWKCVLT VAGIRIFEDV SDHKNGKAVL AKSVGVIDAT ADTVFEVILS TKQQKRYEWD TLMCDLELID SYDGHYDVVY GTYDSKYLSR
301: WHSKQDFVFS RQWFRGQDGT YTILQFPAIH KKKPQRSGYR RAKVNPSSWE IRNLNTSMAS NSPRCLVTHT LEIHSTSWCR WKKNKSSKFE RSIPYALLCQ
401: VSGLKEYIAA NPALHHENAT TIVHSKLSDA SISSAEYEDE MQDEFYDAIT ADSSTSDEES DDDQKLVLQE ARVKLKNISW AITTLALMRT AAPDLTEELD
501: PHVTHITIPS DLHGSLRKGN DDNDTNCWAS PSGKGFMIRG KNYLKDSSKV VGGDPLLKLV AVDWFTVDKS ADRIALHPKC LVQSEAGKTL PFILVINLQV
601: PAKPNYSLVL YYAADRPINK NSLLAKFVDG SDAFRDSRFK LIPSIVEGYW MVKRAVGTKA CLLGKAVTCK YFRQDNFLEI DVDIGSSSVA RSVIGLVLGY
701: VTSLVVDLAI LIQANEEVEL PEYILGTVRL NRLKLESAVP LEV

Best Arabidopsis Sequence Match ( AT5G35180.2 )
(BLAST)

001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEV

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.