Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G173000.1 | Wheat | cytosol | 95.91 | 96.04 |
| TraesCS5D01G177500.2 | Wheat | cytosol | 96.04 | 95.54 |
| TraesCS5B01G170400.1 | Wheat | cytosol | 95.51 | 95.51 |
| EES13904 | Sorghum | plastid | 83.51 | 82.64 |
| Zm00001d032166_P003 | Maize | endoplasmic reticulum, plasma membrane | 39.71 | 81.13 |
| Os08t0439100-01 | Rice | plasma membrane | 81.13 | 80.6 |
| GSMUA_Achr9P13170_001 | Banana | nucleus | 64.78 | 65.38 |
| KRH20109 | Soybean | cytosol, nucleus | 62.66 | 63.59 |
| KRH03545 | Soybean | nucleus | 62.01 | 63.26 |
| Solyc07g005000.2.1 | Tomato | cytosol | 60.16 | 60.56 |
| KRH12970 | Soybean | cytosol | 57.26 | 59.29 |
| CDY58454 | Canola | cytosol | 58.31 | 57.7 |
| Bra038938.1-P | Field mustard | nucleus | 58.44 | 57.53 |
| CDY41767 | Canola | extracellular, golgi | 7.12 | 56.84 |
| CDY41766 | Canola | nucleus | 58.71 | 56.76 |
| AT5G35180.4 | Thale cress | cytosol | 59.63 | 55.73 |
| HORVU7Hr1G072050.4 | Barley | cytosol | 13.59 | 32.59 |
| HORVU7Hr1G098100.1 | Barley | plastid | 13.59 | 29.1 |
| HORVU7Hr1G117780.12 | Barley | plastid | 27.18 | 27.73 |
| HORVU7Hr1G008800.4 | Barley | plastid | 28.36 | 25.72 |
| HORVU6Hr1G002050.2 | Barley | plastid | 26.65 | 25.41 |
| HORVU1Hr1G041740.29 | Barley | extracellular, nucleus, plasma membrane | 25.2 | 24.61 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | UniProt:A0A287R863 | ncoils:Coil | InterPro:EDR2_C | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008289 | GO:GO:0016020 |
| EnsemblPlantsGene:HORVU5Hr1G053070 | EnsemblPlants:HORVU5Hr1G053070.9 | InterPro:IPR002913 | InterPro:IPR023393 | PFAM:PF01852 | PFAM:PF07059 |
| PFscan:PS50848 | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF49 | SUPFAM:SSF50729 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | UniParc:UPI000B472C43 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:416101260..416143743
Molecular Weight (calculated)
84935.7 Da
IEP (calculated)
7.436
GRAVY (calculated)
-0.456
Length
758 amino acids
Sequence
(BLAST)
(BLAST)
001: HRTRSEMATP SPLPPAGEVI EVENSEPGSP DAGSRSSGSG SGSGRSSSEY SGWVYHLGVN SIGHEYCHLR FLVIRGKCVA MYKRDPHDNP GLEPIRKGFV
101: SPTLVVEEVG RKKVNHGDVY VLKLYSKLDQ TKKGEIACAT PGEAQKWTEA FEQAKQQAEY DLTRGVNWKR LQSENEFNLD GHRPRVRRGL GKLVRIGKGP
201: EMLLRQSSDL QSHERVNTNF GGDTGDALEA HEWRFVRTLN GIRIFEDIAN SKGGKGILLK SIGVVGANPD TVFEMVLSRD KHKRYEWDML ISDLELVETI
301: DGYCDVVYGT YEPKYLNWWK SKKDFVFSRQ WFRGQDGAYN ILQSPASHKK KPPRHGYERT HINPTTWEIK RLNTSESTPK CIVTRMVEIS PGFWDRWRRR
401: TSSNFERSIP YALLSQVAGL REYFAANPAI TSDLPSTVVK SKASESLIIQ SELEYSEPND EFYDALVRGE SFEDDSDDDD DDDDDAGKVK LKNVSWAIAG
501: LALKRTKASL ERSELVTNSI PIAIESSHFH GTVRQAKSED DPNSWSSPGG EKFMIRGKTY LTDYAKIAGG DPLLKLIAVD WFKVNERFDS VALHPKSLVQ
601: SEAAKKIPFI LVVNLQVPAK PNYNLVMYYA AEKPVNKGSL LGRFIDGTDA FRDARFKLIP SIVEGYWMVK RAVGTRACLL GKAVTCNYLR QDNFLEIDVD
701: IGSSSVARSI IGLVLGYVTS IVVDLAILVE AKEEKELPEY ILGTVRLNRV NPEAAVPI
101: SPTLVVEEVG RKKVNHGDVY VLKLYSKLDQ TKKGEIACAT PGEAQKWTEA FEQAKQQAEY DLTRGVNWKR LQSENEFNLD GHRPRVRRGL GKLVRIGKGP
201: EMLLRQSSDL QSHERVNTNF GGDTGDALEA HEWRFVRTLN GIRIFEDIAN SKGGKGILLK SIGVVGANPD TVFEMVLSRD KHKRYEWDML ISDLELVETI
301: DGYCDVVYGT YEPKYLNWWK SKKDFVFSRQ WFRGQDGAYN ILQSPASHKK KPPRHGYERT HINPTTWEIK RLNTSESTPK CIVTRMVEIS PGFWDRWRRR
401: TSSNFERSIP YALLSQVAGL REYFAANPAI TSDLPSTVVK SKASESLIIQ SELEYSEPND EFYDALVRGE SFEDDSDDDD DDDDDAGKVK LKNVSWAIAG
501: LALKRTKASL ERSELVTNSI PIAIESSHFH GTVRQAKSED DPNSWSSPGG EKFMIRGKTY LTDYAKIAGG DPLLKLIAVD WFKVNERFDS VALHPKSLVQ
601: SEAAKKIPFI LVVNLQVPAK PNYNLVMYYA AEKPVNKGSL LGRFIDGTDA FRDARFKLIP SIVEGYWMVK RAVGTRACLL GKAVTCNYLR QDNFLEIDVD
701: IGSSSVARSI IGLVLGYVTS IVVDLAILVE AKEEKELPEY ILGTVRLNRV NPEAAVPI
001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEE
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEE
Arabidopsis Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.