Factsheet for GSMUA_Achr9P13170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032166_P003	Maize	endoplasmic reticulum, plasma membrane	32.76	66.31
EES13904	Sorghum	plastid	66.84	65.54
TraesCS5A01G173000.1	Wheat	cytosol	65.51	64.99
Os08t0439100-01	Rice	plasma membrane	65.91	64.88
HORVU5Hr1G053070.9	Barley	cytosol, nucleus	65.38	64.78
TraesCS5D01G177500.2	Wheat	cytosol	65.51	64.57
KRH03545	Soybean	nucleus	63.78	64.47
KRH20109	Soybean	cytosol, nucleus	64.05	64.39
TraesCS5B01G170400.1	Wheat	cytosol	64.98	64.38
KRH12970	Soybean	cytosol	60.05	61.61
Solyc07g005000.2.1	Tomato	cytosol	61.52	61.35
CDY58454	Canola	cytosol	59.65	58.49
Bra038938.1-P	Field mustard	nucleus	59.25	57.79
CDY41766	Canola	nucleus	59.39	56.89
AT5G35180.4	Thale cress	cytosol	60.99	56.47
CDY41767	Canola	extracellular, golgi	7.06	55.79
GSMUA_Achr7P15920_001	Banana	cytosol	14.65	33.54
GSMUA_Achr5P21900_001	Banana	cytosol	14.65	33.23
GSMUA_Achr4P18250_001	Banana	mitochondrion	13.32	32.05
GSMUA_Achr5P04860_001	Banana	plastid	11.72	31.43
GSMUA_Achr5P17990_001	Banana	mitochondrion	27.56	28.43
GSMUA_Achr1P11490_001	Banana	plastid	15.05	28.32
GSMUA_Achr4P05670_001	Banana	mitochondrion	26.9	27.79
GSMUA_Achr11P...	Banana	mitochondrion	27.83	27.57
GSMUA_Achr4P12370_001	Banana	mitochondrion	26.36	27.46
GSMUA_Achr11P...	Banana	cytosol	20.11	26.96
GSMUA_Achr1P08990_001	Banana	nucleus	24.77	26.69
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	25.83	26.36
GSMUA_Achr2P00220_001	Banana	nucleus	23.17	25.51
GSMUA_Achr4P18260_001	Banana	mitochondrion	13.58	23.34

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008289	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr9G13170_001	EnsemblPlants:GSMUA_Achr9P13170_001
EnsemblPlants:GSMUA_Achr9T13170_001	InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0TZX5	PFAM:PF01852
PFAM:PF07059	InterPro:PH_domain	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF49	SMART:SM00233
SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00029586C3	SEG:seg

Description

DUF1336 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G13170_001]

Coordinates

chr9:+:8556314..8580576

Molecular Weight (calculated)

85254.4 Da

IEP (calculated)

7.812

GRAVY (calculated)

-0.440

Length

751 amino acids

Sequence
(BLAST)

001: MEDGAATKEA TVAGAGETMS DAEGYASEKS GREVEYFGWV YHLGVNSIGH EYCHLRYLVL KGTYVAMYKR EPGNHRGIKP IRKGVVNHTL VVEELGRHNF
101: NNGEFYVLRF YNRLDQTKKG EIACGSAGEA RKWIEAFEQA KQQAEYNLLR GSSRHKLSID NELNLEGHRP RVRRYAKDLR KKLIKIGKGP EMLIRRSSGL
201: GSHLRRETYI EADVEDVIET HKWRCVRTVN GIRIFEDVTN LKGARGLLLK SVGVIEANAD TIFEVVLSPD RHKRYEWDML TGDLELVDSV DGHYDVVYGT
301: YEPTQLNWWR SKKDFVFSRQ WFRGQDESYT ILQFPAVNKK RPQRSGYQRT KINPSTWEIR RLNTSDSSTA KCQVTLMLEV PAKSWGIWRR NQYSNFDRTI
401: PYALLCQVAG LKEYFGANPA LTSYSPSTIV DSPISDSSNA HTEFKDSEVD EEFFDAIASS DSLEDEDSDD EIELPKAGNM KLKNVSWAIL ALKRSKAVLE
501: RSELDANSPS IIIDPSQFHG SMRQGKGETD TNCWSSPSGQ GFMIRGKNYL KDYSKIVGGD PLLKLIGVDW FRADNSIDKV ALHPKSFIQS EAGKRLPFIL
601: IINLEIPSKP NYSLVLYYAA EKPINKESLL GRFLDGTNMF RDSRFKLIPR IVEGYWMVKR AVGSKACLLG KAVTCKYLRQ DNFLEIDVDI GSSSVARSII
701: SLVLGYITSI VVDLGILIEA KEEEELPEYI LGTVRLNRVR VESAVPFWDE S

Best Arabidopsis Sequence Match ( AT5G35180.1 )
(BLAST)

001: MTSPGSKKVV TTDDGSEKKV SGNLGKVSFS GDLNHSGSHS GSHSRSSSSA GGGEGGTFEY FGWVYHLGVN KIGHEYCNLR FLFIRGKYVE MYKRDPHENP
101: DIKPIRRGVI GPTMVIEELG RRKVNHGDVY VIRFYNRLDE SRKGEIACAT AGEALKWVEA FEEAKQQAEY ALSRGGSTRT KLSMEANIDL EGHRPRVRRY
201: AYGLKKLIRI GQGPESLLRQ SSTLVNDVRG DGFYEGGDNG DAIEAHEWKC VRTINGVRIF EDVANFKAGR GVLVKAVAVV EASADTVFEV LLNIDKHQRY
301: EWDAVTGDSE KIDSYEGHYD VIYCIYDPKY LSRWQSKRDF VFSRQWVRGQ DGTYTILQFP AVHKKRPAKS GYRRTEITPS TWEIKSLKKR SDAETPSCLV
401: THMLEIHSKR WCKWKRTSYS KFEKTIPYAL LLQVAGLKEY IGANPAFKYE TSATVVQSKF QDVPNGEYVD EEMEEQFYDA TDSSSGEEDE EESDDDDENQ
501: DNKEIKVKLK NVSWAIASLS LKRPKAPGAS NVLDASVDPV SIDPSQFQGS LRKGNGDKDS NCWNSPSGMG FMIRGKTYLK DNAKVMGGQP LLTLISVDWF
601: KVDSAVDNIA LHPKCLIQSE PGKKLPFILV INLQVPAKPN YCLVLYYAAD RPVNKTSSLG KFVDGSDSYR DARFKLIPSI VQGYWMVKRA VGTKACLLGK
701: AVTCKYLRQD NFLEIDVDIG SSAVARSVIG LVLGYVTSLI VDLAILIEGK EESDLPEYIL GTVRLNRIEL DSAVSFEE

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G35180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.