Factsheet for GSMUA_Achr1P08990_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18250_001	Banana	mitochondrion	32.42	72.44
VIT_06s0004g02720.t01	Wine grape	cytosol	69.15	65.67
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	68.72	65.08
GSMUA_Achr11P...	Banana	cytosol	51.65	64.29
Solyc11g069530.1.1	Tomato	cytosol	67.29	64.25
GSMUA_Achr4P18260_001	Banana	mitochondrion	40.03	63.84
KRH22877	Soybean	plastid	67.29	63.55
Solyc06g075130.2.1	Tomato	nucleus	64.13	62.96
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	66.43	62.91
PGSC0003DMT400062486	Potato	nucleus	66.0	62.84
GSMUA_Achr2P00220_001	Banana	nucleus	60.98	62.32
AT2G28320.1	Thale cress	cytosol	65.14	61.6
CDY04553	Canola	cytosol	63.7	60.74
Bra011959.1-P	Field mustard	cytosol	63.56	60.44
CDX71361	Canola	cytosol	63.56	60.44
GSMUA_Achr5P17990_001	Banana	mitochondrion	32.14	30.77
GSMUA_Achr5P21900_001	Banana	cytosol	14.2	29.91
GSMUA_Achr4P12370_001	Banana	mitochondrion	30.85	29.82
GSMUA_Achr11P...	Banana	mitochondrion	32.14	29.55
GSMUA_Achr4P05670_001	Banana	mitochondrion	30.7	29.44
GSMUA_Achr7P15920_001	Banana	cytosol	13.49	28.66
GSMUA_Achr5P04860_001	Banana	plastid	11.19	27.86
GSMUA_Achr9P13170_001	Banana	nucleus	26.69	24.77
GSMUA_Achr1P11490_001	Banana	plastid	13.49	23.56

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr1G08990_001	EnsemblPlants:GSMUA_Achr1P08990_001	EnsemblPlants:GSMUA_Achr1T08990_001	InterPro:IPR001849	InterPro:IPR002913
InterPro:IPR011993	InterPro:IPR023393	UniProt:M0RYA8	PFAM:PF00169	PFAM:PF01852	PFAM:PF07059
InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF86
SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000294D517	SEG:seg	:	:	:	:

Description

DUF1336 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G08990_001]

Coordinates

chr1:-:6895053..6903602

Molecular Weight (calculated)

78850.0 Da

IEP (calculated)

8.542

GRAVY (calculated)

-0.371

Length

697 amino acids

Sequence
(BLAST)

001: MEGWLYLFRS NRLGLQYSRK RYFVLDHRDS SLNCYRAAPT ASTQVPVRCA QIDSCIRVND NGRENIKGNV FFLFTLYNTS NHSNQLKLGA RSSEEAARWI
101: SSLIEATLKV CPTKEDNTVA CSKRRWPSLR LSRRRSHMHS FDMNAISSTQ MNQITSDVVA PSSWTIFGCN NGLRLFKEVK DDDFLGEHWD DHPAIMAIGV
201: VDATPEAIFW AVMSLGPSRS EWDFCFDHGS VIEHLDGHTD IIHKKLRACR GMKPRDLLAR RYWRREEDGT YVILYHSVFH RKCRPQKGYT RACLKSGGYV
301: ISPINQGKES VVKHMLAIDW KFWLPYIFTS SAKNITIRML ERVAALREMF HAKLGKCPSS DNRKSEERTE GSQESDTKPA SMSGSFLELN DAADEFFDFP
401: DEPEYDKQED TWPSDSQLQS QNLQQPKLST AAVLMKRLQG LAVQRRGYMD LQDAPIGDAA SCSYGSTLQK DSSFSLPCSW ASADPSTFLI RGRTYLQDHK
501: KIAVNDTLMK MVAADWLKSD KREDDLGGRP GSIVQKYAAQ GGREFFFIVN IQVPGSTTYS LALYYMTHIP VESIPLLKKF VGGDDAYRNS RFKLIPHITK
601: GSWIVKQSVG KKACLVGRAL EINYFHGTNY LELGIDIGSS TVARGVVSLV LGYLSNLVIE MAFLIQGNSE EELPEFLLGT CRLNHLDASK AISIKPW

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.