Factsheet for VIT_06s0004g02720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0479800-01	Rice	cytosol	13.62	83.33
Solyc11g069530.1.1	Tomato	cytosol	78.75	79.18
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	78.07	77.85
KRH22877	Soybean	plastid	77.93	77.51
PGSC0003DMT400062486	Potato	nucleus	77.25	77.46
Solyc06g075130.2.1	Tomato	nucleus	73.43	75.92
CDY04553	Canola	cytosol	74.11	74.42
Bra011959.1-P	Field mustard	cytosol	73.98	74.08
CDX71361	Canola	cytosol	73.98	74.08
GSMUA_Achr4P18250_001	Banana	mitochondrion	31.47	74.04
AT2G28320.1	Thale cress	cytosol	73.16	72.86
GSMUA_Achr1P08990_001	Banana	nucleus	65.67	69.15
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	68.53	68.34
EER91476	Sorghum	nucleus	70.84	67.97
GSMUA_Achr11P...	Banana	cytosol	51.77	67.86
TraesCS1B01G173600.1	Wheat	nucleus	70.16	67.85
TraesCS1D01G155000.1	Wheat	nucleus	70.16	67.85
TraesCS1A01G156500.1	Wheat	nucleus	70.03	67.72
Zm00001d032685_P001	Maize	nucleus	68.94	65.97
GSMUA_Achr2P00220_001	Banana	nucleus	61.04	65.69
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	67.3	63.66
VIT_02s0033g00160.t01	Wine grape	cytosol, extracellular	7.08	37.14
VIT_04s0008g07260.t01	Wine grape	cytosol, nucleus, plastid	13.22	31.8
VIT_02s0033g00080.t01	Wine grape	mitochondrion	30.65	31.69
VIT_15s0107g00410.t01	Wine grape	cytosol	22.34	29.55
VIT_02s0033g00120.t01	Wine grape	cytosol	28.88	28.88
VIT_15s0107g00440.t01	Wine grape	cytosol	11.04	23.75
VIT_05s0102g00770.t01	Wine grape	cytosol	11.31	23.06

Protein Annotations

EntrezGene:100250069	Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	ProteinID:CBI16325	ProteinID:CBI16325.3
UniProt:D7SKZ7	InterPro:EDR2_C	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008289	GO:GO:0016020	InterPro:IPR001849	InterPro:IPR002913
InterPro:IPR011993	InterPro:IPR023393	PFAM:PF00169	PFAM:PF01852	PFAM:PF07059	InterPro:PH-like_dom_sf
InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF86	SMART:SM00233
SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00015C7FE7
ArrayExpress:VIT_06s0004g02720	EnsemblPlantsGene:VIT_06s0004g02720	EnsemblPlants:VIT_06s0004g02720.t01	RefSeq:XP_010651179.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:3374081..3381670

Molecular Weight (calculated)

82962.7 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.417

Length

734 amino acids

Sequence
(BLAST)

001: MGVSQNDGRM EGWLFLIRSN RFGLQYSRKR YFVLEDHYLK SFKSVPISKD EVPVRSAIID SCIRATDNGR ESIHRKVFFI FTLYNTSNHN DQLKLGASSP
101: EEAARWMQSF QEAALKAGPN TRGGGVGCSK SKWPSFRLIC SNRIHRTNSI DWTLCSSTHM DPMTSDVIAP SPWTIFGCQN GLRLFKEAKD RGSHGKWDDH
201: PAIMAVGVVD GTSEAIFQTL MSLGPSRSEW DFCFYKGNVV EHLDGHTDIV HKQLYRDWLP WGMKRRDLLL RRYWRREDDG TYVILYHSVI HKKCPPQRGY
301: VRACLKSGGY VVSPVNQGKQ SVVKHMLAID WKFWRSYLQT SSARSITIRM LGRVAALREL FRAKLGNYPS SDFSSGELTS NVRLPQSEQD VKTEAQTLAE
401: EKTEEDIEDR EVDKTPSEHA SLVGLNDAAD EFFDVPEPSD SDLAENGWPS DFGSEMYSQD IRHPKLSTAA GFVKKLHDLA IQKRGYMDLQ EVAREDRIPC
501: CYGATLPKDP TCNLACSWTE ADPSTFLIRG KNYLEDHQKV KAKGTLMKMV AADWLRSDKR EDDLGGRPES IVQKYAAQGG PEFFFIVNIQ VPGSTTYSLA
601: LYYMMNTPVE DSPLLESFIK GDDAYRNSRF KLIPYISQGS WIVKQSVGKK ACLVGQALEI NYFHGKNYLE LGIDIGSSTV ARGVVSLVLG YLNNLVIEMT
701: FLIQANTPEE LPEYLLGTCR LNHLDASKSV LVKP

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.