CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0479800-01	Rice	cytosol	15.42	98.33
Zm00001d032685_P001	Maize	nucleus	91.63	91.39
TraesCS1D01G155000.1	Wheat	nucleus	87.58	88.27
TraesCS1B01G173600.1	Wheat	nucleus	87.06	87.75
TraesCS1A01G156500.1	Wheat	nucleus	86.93	87.62
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	82.61	81.44
GSMUA_Achr4P18250_001	Banana	mitochondrion	30.46	74.68
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	68.5	71.2
VIT_06s0004g02720.t01	Wine grape	cytosol	67.97	70.84
Solyc11g069530.1.1	Tomato	cytosol	66.27	69.45
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	66.41	69.02
KRH22877	Soybean	plastid	66.54	68.97
GSMUA_Achr11P...	Banana	cytosol	49.93	68.21
PGSC0003DMT400062486	Potato	nucleus	65.23	68.17
Solyc06g075130.2.1	Tomato	nucleus	62.48	67.32
GSMUA_Achr2P00220_001	Banana	nucleus	59.74	67.01
CDY04553	Canola	cytosol	63.53	66.48
CDX71361	Canola	cytosol	63.66	66.44
Bra011959.1-P	Field mustard	cytosol	63.53	66.3
AT2G28320.1	Thale cress	cytosol	63.01	65.4
EER94411	Sorghum	cytosol, nucleus, plastid	30.85	32.28
EER89092	Sorghum	nucleus	31.37	32.0
OQU90416	Sorghum	mitochondrion	29.02	30.54
EES06097	Sorghum	cytosol	30.98	29.66
EES13904	Sorghum	plastid	27.06	27.02
OQU76985	Sorghum	cytosol, extracellular, nucleus	11.37	26.77
KXG24431	Sorghum	plastid	12.16	23.31

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	UniProt:C5WYD3	ncoils:Coil	InterPro:EDR2_C
EnsemblPlants:EER91476	ProteinID:EER91476	ProteinID:EER91476.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393	PFAM:PF00169	PFAM:PF01852
PFAM:PF07059	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136
PANTHER:PTHR12136:SF86	SMART:SM00233	SMART:SM00234	EnsemblPlantsGene:SORBI_3001G217400	SUPFAM:SSF50729	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	unigene:Sbi.10433	UniParc:UPI00081ABF6F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:20210759..20221929

Molecular Weight (calculated)

86252.4 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.382

Length

765 amino acids

Sequence
(BLAST)

001: MAGGAEVAVV EDTAVVGAPT ATATPPPPDA AGGAEEGMRM EGWLYLIRSN RFGLQYSRKR YFVLEDAALR CFKSAPSSKR EDPVRSAIID SCIRVTDNGR
101: ESLHRSDFYI FTLYNASNHY DQLKLGARSS EEAARWIRCL MESALKSPRK DEHIVACSHR RWQAFRLSRR NRQMHSIDWT LFSSAHNDPM ASDVIAPSPW
201: TIFGCRNGLR LFTEANDGGS RGKYWDDHPA IMAVGVVDAN SEAVFQTLMS LGQSRSEWDF CLREGKVVEH LDGHTDIIHK KLRGDWLPWG MRKRDLLLRR
301: YWRREDDGTY VILYHSVFHY KCRPERGYIR ACLKSGGYVI SPVNQGRQSV VKHMLAIDWK FWKSYLFTSS AKYITIRMLG RVAALREFFR AKNGNCACME
401: FSSGELTRDM GLPQGENQRI NLEIQQENEN RRLEGPTEGS VGGSNRHLNS TSSFVQLNDA TDEFFDVPDE SEYDQREVMF PSDESTHASD QRHAKLSTAA
501: VFVKRLHDLA VQKRGYVDLQ GAADADNGPC CYGYTLPKDS SYAVPSTWAM TDPTTFLIRG ETYLHDRLKI KANSTLMQMV GADWIKSDKR EDDLAGRPGG
601: LVQKCAAQGG TKFFFVVNIQ VPGSTTYSLA LYYMMDTPLE KVPLLERFVN GDDAFRNSRF KLIPYISKGS WIVKQSVGKK ACLVGQALEI NYFRGNNYLE
701: LGVDIGSSTV ARGVVSLVLG YLNNLVIEMA FLVQGNTYEE LPEFLLGTCR LNYLDASKAV SIDEC

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.