Factsheet for TraesCS1D01G155000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G173600.1	Wheat	nucleus	99.47	99.47
TraesCS1A01G156500.1	Wheat	nucleus	99.21	99.21
Os10t0479800-01	Rice	cytosol	15.55	98.33
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	90.65	88.66
EER91476	Sorghum	nucleus	88.27	87.58
Zm00001d032685_P001	Maize	nucleus	85.38	84.48
GSMUA_Achr4P18250_001	Banana	mitochondrion	31.09	75.64
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	69.3	71.47
VIT_06s0004g02720.t01	Wine grape	cytosol	67.85	70.16
GSMUA_Achr11P...	Banana	cytosol	51.25	69.46
Solyc11g069530.1.1	Tomato	cytosol	66.8	69.45
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	67.06	69.16
KRH22877	Soybean	plastid	67.06	68.97
PGSC0003DMT400062486	Potato	nucleus	66.14	68.58
Solyc06g075130.2.1	Tomato	nucleus	63.9	68.31
CDY04553	Canola	cytosol	65.22	67.72
CDX71361	Canola	cytosol	65.22	67.53
Bra011959.1-P	Field mustard	cytosol	65.09	67.39
GSMUA_Achr2P00220_001	Banana	nucleus	60.47	67.3
AT2G28320.1	Thale cress	cytosol	63.77	65.67
TraesCS7D01G523200.2	Wheat	plastid	31.09	32.55
TraesCS7D01G045000.1	Wheat	cytosol, nucleus, plastid	30.17	29.93
TraesCS7D01G417100.2	Wheat	cytosol, mitochondrion, nucleus	11.86	28.04
TraesCS7D01G299000.1	Wheat	cytosol	10.8	26.54
TraesCS6D01G007600.1	Wheat	nucleus	30.04	25.94
TraesCS5D01G177500.2	Wheat	cytosol	25.69	25.59

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393	PFAM:PF00169
PFAM:PF01852	PFAM:PF07059	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848
PANTHER:PTHR12136	PANTHER:PTHR12136:SF86	SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS1D01G155000	EnsemblPlants:TraesCS1D01G155000.1	TIGR:cd00177	TIGR:cd00821
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:216715061..216726981

Molecular Weight (calculated)

85001.9 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.379

Length

759 amino acids

Sequence
(BLAST)

001: MGGAEAAVVE AASTAAAAEA AEGGEDGRME GWLYLIRSNR LGLQTSRKRY FVLEDSALRC FKAAPAPSSS SSKREDPVRS AVIDSCIRVT DNGRESVHRS
101: VFYIFTLYNA SNHYDQLKLG ARSSEEAARW IRCLMESALK SPRKDEHVVA CSHRRWQAFR LSRRSNRMHS IDWTILSSSH NDPMASDVIA PSAWTIFGCT
201: NGLRLFTEAK DGGSRGKYWD DHPAIMAVGV VDANSEDIFQ TLMSLGQSRS EWDFCLREGR VVEHLDGHSD IIHKKLRGDW LPWGMRKRDL LLRRYWRRED
301: DGTYVILYHS VFHNRCSPEK GYIRACLKSG GYVISPVSQG RQSVVKHMLA IDWKFWKSYL LTSSAKYITI RMLGRVAALR ELFRAKNGNC ACMEFSSGEL
401: MRDMGLPQGG NERTKIEMQS ANECERLEGP VEGPQGGSNR HLSSTGSLVQ LNDATDEFFD VPDESEYDQR EAMWSSDEST HAADQRHAKL SSAAVFVRKL
501: HDLAVQKRGY VDLQGAADAD NGPCYYGHTL PKDSSCTMPS SWSMTDPTTF LIRGESYLLD RQKIKAENTL MQMVGADWIK SDKREDDLAG RPGGLVQKYA
601: AQGGSKFFFI VNIQVPGSTT YSLALYYMMD TPLEKVPLLE RFVNGDDTFR NSRFKLIPYI SKGSWIVKQS VGKKACLVGQ ALEINYFRGS NYLELGVDIG
701: SSTVARGVVS LVLGYLNNLV IEMAFLVQGN TQEELPEFLL GTCRLNYLDA SKAVSLDEC

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.