CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011959.1-P	Field mustard	cytosol	99.59	99.59
CDY04553	Canola	cytosol	99.32	99.59
AT2G28320.1	Thale cress	cytosol	91.68	91.18
Os10t0479800-01	Rice	cytosol	14.19	86.67
VIT_06s0004g02720.t01	Wine grape	cytosol	74.08	73.98
Solyc11g069530.1.1	Tomato	cytosol	72.03	72.33
GSMUA_Achr4P18250_001	Banana	mitochondrion	30.7	72.12
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	70.12	69.84
KRH22877	Soybean	plastid	70.12	69.65
PGSC0003DMT400062486	Potato	nucleus	69.3	69.4
Solyc06g075130.2.1	Tomato	nucleus	66.98	69.15
CDY64695	Canola	cytosol, golgi, nucleus	29.2	67.3
TraesCS1D01G155000.1	Wheat	nucleus	67.53	65.22
TraesCS1B01G173600.1	Wheat	nucleus	67.39	65.09
TraesCS1A01G156500.1	Wheat	nucleus	67.26	64.95
EER91476	Sorghum	nucleus	66.44	63.66
GSMUA_Achr1P08990_001	Banana	nucleus	60.44	63.56
CDX67608	Canola	cytosol	61.8	62.74
GSMUA_Achr11P...	Banana	cytosol	47.89	62.68
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	62.89	62.64
CDY07523	Canola	cytosol	61.66	62.6
CDY02892	Canola	cytosol	61.8	62.48
CDX78263	Canola	cytosol	61.39	62.33
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	65.62	61.98
CDX73448	Canola	cytosol	60.98	61.91
Zm00001d032685_P001	Maize	nucleus	63.85	61.02
GSMUA_Achr2P00220_001	Banana	nucleus	54.43	58.5
CDY69875	Canola	cytosol	36.15	57.36
CDY41767	Canola	extracellular, golgi	4.77	36.84
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	13.78	33.33
CDX78399	Canola	nucleus, plastid	13.64	33.0
CDX99399	Canola	mitochondrion	31.51	32.17
CDX78916	Canola	mitochondrion	31.38	32.03
CDY13045	Canola	mitochondrion	31.38	32.03
CDY23114	Canola	mitochondrion	31.24	31.89
CDX98603	Canola	mitochondrion	30.97	31.62
CDY01578	Canola	mitochondrion	30.83	31.56
CDY05382	Canola	cytosol	10.78	29.37
CDY47711	Canola	cytosol	12.14	28.9
CDX88150	Canola	cytosol	10.91	28.37
CDX80479	Canola	cytoskeleton, cytosol, nucleus	10.91	27.3
CDX88148	Canola	cytosol	9.41	26.14
CDY58454	Canola	cytosol	26.19	25.07
CDY41766	Canola	nucleus	26.19	24.49
CDX80480	Canola	cytosol	6.82	24.39
CDY10168	Canola	nucleus	12.01	15.6
CDX98605	Canola	cytosol	1.77	2.82
CDY47710	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	GO:A0A078C2V3	EnsemblPlants:CDX71361	ProteinID:CDX71361
ProteinID:CDX71361.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	EnsemblPlantsGene:GSBRNA2T00148147001
InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393	PFAM:PF00169	PFAM:PF01852
PFAM:PF07059	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136
PANTHER:PTHR12136:SF86	SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI0004EC5415	SEG:seg	:	:	:

Description

BnaC04g15960D

Coordinates

chrLK031793:-:62746..67402

Molecular Weight (calculated)

82631.5 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.456

Length

733 amino acids

Sequence
(BLAST)

001: MGENESEAKM EGWLYIIRSN RFGLHFSKKR YFILGDHLLK SFKSISDSKT KDGGRSAVID SCIRVTDNGR ESVHRKAFFI FTLYNTSNHN DQLKLGASSP
101: EDAARWINLI KEEALKGSSN PGDVFSCSRS RWDSLRLSSS VREHHSNSID WTLRSSARVD PVTTTDVVAP SPWTIFGCQN GLRLFKEAKE RDSLGRWDDH
201: PAIMAVGVVD GTSENIFQTL LSLGPSRSEW DFCFFQGSVV EHLDGHTDII HKQLYSDWLP WGMKRRDFSL RRYWRREDDG TYVILYHSVF HKKCPPQKGY
301: IRACLKSGGY VISPIDNGKQ SVVKHMLAVD WKSWRSYVKP SLARSITVKM LGRISALREL FRAKHGSFPS SGELSRSARL NQNEESGFGE SSSLTECEMY
401: KDPANEERDK FPSERSSLVD LNDGVDEFFD VPEPSDNDHL DDNWASDFDS DTYSQDTRQP KLNSASSLVR KIHDLAVQKR GYVDLHERAR EESSTPCCYG
501: TTLPTDPTCA LPCSWTTTDP STFLIRGKTY LSDQKKVTAK GTLMQMVAAD WLKSDKREDD LGSRPGGIVQ KYAAKGGPEF FFIVNIQVPG STTYSLVLYY
601: MMSTPIEEHP LLVSFVNGDD AYRNSRFKLI PYISKGSWIV KQSVGKKACL VGQALEINYF RGKNYIELGV DIGSSTVARG VVSLVLGYLN KLVIEMAFLV
701: QANTEEELPE YLLGTCRLNH LDASKSVPVV TQS

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.