CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10168	Canola	nucleus	98.77	42.55
CDY47711	Canola	cytosol	3.7	2.92
CDY01578	Canola	mitochondrion	0.0	0.0
CDY69875	Canola	cytosol	0.0	0.0
CDY64695	Canola	cytosol, golgi, nucleus	0.0	0.0
CDY58454	Canola	cytosol	0.0	0.0
CDY41767	Canola	extracellular, golgi	0.0	0.0
CDY41766	Canola	nucleus	0.0	0.0
CDY23114	Canola	mitochondrion	0.0	0.0
CDY13045	Canola	mitochondrion	0.0	0.0
CDY07523	Canola	cytosol	0.0	0.0
CDY05382	Canola	cytosol	0.0	0.0
CDY04553	Canola	cytosol	0.0	0.0
CDY02892	Canola	cytosol	0.0	0.0
CDX67608	Canola	cytosol	0.0	0.0
CDX99399	Canola	mitochondrion	0.0	0.0
CDX98605	Canola	cytosol	0.0	0.0
CDX98603	Canola	mitochondrion	0.0	0.0
CDX88150	Canola	cytosol	0.0	0.0
CDX88148	Canola	cytosol	0.0	0.0
CDX80480	Canola	cytosol	0.0	0.0
CDX80479	Canola	cytoskeleton, cytosol, nucleus	0.0	0.0
CDX78916	Canola	mitochondrion	0.0	0.0
CDX78399	Canola	nucleus, plastid	0.0	0.0
CDX78263	Canola	cytosol	0.0	0.0
CDX73448	Canola	cytosol	0.0	0.0
CDX71361	Canola	cytosol	0.0	0.0
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY47710	EnsemblPlantsGene:GSBRNA2T00087976001	Gene3D:3.30.40.200	GO:A0A078I9V8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	PFAM:PF00643	PFscan:PS50119	ProteinID:CDY47710	ProteinID:CDY47710.1
SEG:seg	SMART:SM00336	UniParc:UPI0004EEAA6B	UniProt:A0A078I9V8	MapMan:15.5.1.1	:

Description

BnaA10g03990DBnaA10g03990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9V8]

Coordinates

chrLK032731:-:61456..62814

Molecular Weight (calculated)

27217.8 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.551

Length

243 amino acids

Sequence
(BLAST)

001: MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALSSSS CSKETEKNHQ SEPSNNQQKA KEIPSQQQPS SASPLPWAVD DFFHFSDPEF TDKKGQLDLG ELEWFSDMGF FSDQINQETL PAAQVPELSV
201: AHLGHVHSYR PMKSNASYKK PRLEIRVDDE DDEEEHFIVP DLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.