CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47710	Canola	nucleus	42.55	98.77
Bra015470.1-P	Field mustard	cytosol	50.18	91.88
CDY47711	Canola	cytosol	50.18	91.88
AT1G06050.1	Thale cress	cytosol	45.74	82.43
PGSC0003DMT400042135	Potato	cytosol	34.22	61.08
TraesCS7B01G203900.1	Wheat	cytosol	33.33	60.84
TraesCS7D01G299000.1	Wheat	cytosol	33.16	60.52
TraesCS7A01G303600.1	Wheat	cytosol	32.98	60.19
HORVU7Hr1G072050.4	Barley	cytosol	32.8	58.54
TraesCS2A01G242800.1	Wheat	cytosol	31.91	58.25
KRH24608	Soybean	cytosol	31.91	58.06
KRH23216	Soybean	cytosol	22.7	57.92
Solyc06g053360.2.1	Tomato	cytosol	30.32	56.07
VIT_05s0102g00770.t01	Wine grape	cytosol	35.46	55.56
KRH10121	Soybean	endoplasmic reticulum, golgi	33.33	53.56
KRH29613	Soybean	cytosol	26.77	51.01
Os08t0152600-01	Rice	cytosol	32.62	50.97
KXG24431	Sorghum	plastid	34.04	48.12
GSMUA_Achr1P11490_001	Banana	plastid	32.62	46.12
Zm00001d024605_P001	Maize	mitochondrion	33.51	43.55
CDY41767	Canola	extracellular, golgi	6.38	37.89
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	19.5	36.3
CDX78399	Canola	nucleus, plastid	19.5	36.3
CDX88150	Canola	cytosol	16.49	32.98
CDY05382	Canola	cytosol	15.25	31.97
CDX80479	Canola	cytoskeleton, cytosol, nucleus	16.49	31.74
CDX80480	Canola	cytosol	11.52	31.71
CDX88148	Canola	cytosol	14.01	29.92
CDY64695	Canola	cytosol, golgi, nucleus	13.12	23.27
CDX78916	Canola	mitochondrion	17.02	13.37
CDY01578	Canola	mitochondrion	16.84	13.27
CDX99399	Canola	mitochondrion	16.84	13.23
CDY13045	Canola	mitochondrion	16.84	13.23
CDX98603	Canola	mitochondrion	16.84	13.23
CDY58454	Canola	cytosol	17.91	13.19
CDY23114	Canola	mitochondrion	16.67	13.09
CDY41766	Canola	nucleus	17.91	12.88
CDY04553	Canola	cytosol	15.6	12.04
CDX71361	Canola	cytosol	15.6	12.01
CDY07523	Canola	cytosol	15.07	11.77
CDX67608	Canola	cytosol	14.89	11.63
CDX78263	Canola	cytosol	14.54	11.36
CDX73448	Canola	cytosol	14.54	11.36
CDY02892	Canola	cytosol	14.01	10.9
CDY69875	Canola	cytosol	0.89	1.08
CDX98605	Canola	cytosol	0.35	0.43

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:A0A078FDM4	UniProt:A0A078FDM4	EnsemblPlants:CDY10168	ProteinID:CDY10168
ProteinID:CDY10168.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00031982001	InterPro:IPR000315	PFAM:PF00643	PFAM:PF07059
PFscan:PS50119	PANTHER:PTHR12136	PANTHER:PTHR12136:SF61	SMART:SM00336	UniParc:UPI0004EE3E68	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

BnaC05g04110DBnaC05g04110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDM4]

Coordinates

chrLK032001:-:352580..355537

Molecular Weight (calculated)

62652.6 Da

IEP (calculated)

4.999

GRAVY (calculated)

-0.403

Length

564 amino acids

Sequence
(BLAST)

001: MASSGEVTEP EWIKRVKSEG AVPCLKPDSR DSKNSWTTPS PNTFMVRGPH YFSDKVKVPA GEFLLKPLGF DWVKGPTKLS EILSYPSSRI RKAIDEEFQT
101: EDDAAKPFVW AFNLQLPHKD NYSAVAYFVA TEPMLQGSLM DQFLKGDDGF KKSRLKLIAN IVKGPWIVRK AVGEQAICVI GRALSCKYVS GESFVEIDVD
201: IGSSMVASAI VHLAFGYITT LTVDLAFLIE SQTDAELPEK LLGAVRFSEL QTDSAVSMEL SSSNSNQRSS WWKSLGNGFS NLLNQDTPNT NYTSSPGNNQ
301: KDEDKVDSSV LDLLNQESRT VMKIQCDVCE NAPATVICCA DEAALCPKCD VEIHAANKLA SKHQRLHLNS LSTKFPRCDI CQEKAAFIFC VEDRALLCRD
401: CDESIHVANS RSANHQRFLA TGIKVALSSS SCSKETDKNH QSEPSNNQQK AKEIPSQQQP SSASPLPWAV DDFFHFSDPE FTDKKGQLDL GELEWFSDMG
501: FFSDQINQET LPAAQVPELS VAHLGHVHSY RPMKSSVSYK KPRLEIRVDD EDDEEEHFIV PDLG

Best Arabidopsis Sequence Match ( AT1G06050.1 )
(BLAST)

001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT1G06050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.