CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006077.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	99.01	99.01
CDX78399	Canola	nucleus, plastid	99.01	99.01
AT5G10750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	92.74	93.05
KRH52302	Soybean	cytosol	70.3	73.7
KRH61636	Soybean	cytosol	69.64	71.04
VIT_04s0008g07260.t01	Wine grape	cytosol, nucleus, plastid	69.97	69.51
KRH15692	Soybean	cytosol	66.34	67.45
PGSC0003DMT400067616	Potato	cytosol	59.41	62.07
CDX80479	Canola	cytoskeleton, cytosol, nucleus	58.42	60.41
Solyc08g068880.1.1	Tomato	mitochondrion	62.05	59.68
PGSC0003DMT400038272	Potato	mitochondrion	61.39	59.05
CDY05382	Canola	cytosol	51.82	58.36
CDX88150	Canola	cytosol	54.13	58.16
CDX88148	Canola	cytosol	50.49	57.95
GSMUA_Achr5P04860_001	Banana	plastid	53.47	57.86
GSMUA_Achr5P21900_001	Banana	cytosol	62.71	57.4
GSMUA_Achr7P15920_001	Banana	cytosol	62.05	57.32
Solyc08g006590.1.1	Tomato	cytosol	52.48	57.19
CDX80480	Canola	cytosol	38.28	56.59
KRH05337	Soybean	cytosol	50.49	56.46
Zm00001d014641_P001	Maize	cytosol, extracellular, nucleus	57.76	53.85
TraesCS7D01G417100.2	Wheat	cytosol, mitochondrion, nucleus	56.77	53.58
TraesCS7A01G424300.1	Wheat	cytosol	56.44	53.44
TraesCS7B01G325500.1	Wheat	cytosol	56.44	53.11
OQU76985	Sorghum	cytosol, extracellular, nucleus	56.77	52.92
Zm00001d036506_P001	Maize	extracellular, nucleus, plastid	54.79	50.76
HORVU7Hr1G098100.1	Barley	plastid	56.11	48.02
CDY47711	Canola	cytosol	36.3	35.71
CDY41767	Canola	extracellular, golgi	9.9	31.58
CDY64695	Canola	cytosol, golgi, nucleus	27.72	26.42
CDY10168	Canola	nucleus	36.3	19.5
CDY13045	Canola	mitochondrion	38.28	16.16
CDY23114	Canola	mitochondrion	37.95	16.02
CDX78916	Canola	mitochondrion	37.95	16.02
CDX99399	Canola	mitochondrion	37.95	16.02
CDY01578	Canola	mitochondrion	37.29	15.78
CDX98603	Canola	mitochondrion	37.29	15.74
CDY58454	Canola	cytosol	35.64	14.1
CDY04553	Canola	cytosol	33.33	13.82
CDX71361	Canola	cytosol	33.33	13.78
CDY41766	Canola	nucleus	35.64	13.78
CDX67608	Canola	cytosol	31.68	13.3
CDX78263	Canola	cytosol	31.35	13.16
CDY07523	Canola	cytosol	31.02	13.02
CDX73448	Canola	cytosol	30.69	12.88
CDY02892	Canola	cytosol	30.36	12.69
CDY69875	Canola	cytosol	2.64	1.73
CDX98605	Canola	cytosol	0.66	0.43
CDY47710	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70368	EnsemblPlantsGene:GSBRNA2T00140155001	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF88	PFAM:PF07059
ProteinID:CDX70368	ProteinID:CDX70368.1	UniParc:UPI0004EEE45F	MapMan:35.1	:	:

Description

BnaC03g04520D

Coordinates

chrLK031791:+:65149..66352

Molecular Weight (calculated)

33153.2 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.351

Length

303 amino acids

Sequence
(BLAST)

001: MSPSKQRHHR SSTGDTKSKP FRSASSSATP EWIAEAINGG SLRRVDPETG TDGWASPPGD VFSLRSDSYL TKKQKSPAGD YLLSPAGMDW LKSTSKLDNV
101: LARPDNRVAH ALRKAQSRGQ SLKSFIFAVN LQIPGKDHHS AVFYFAAEEP IPSGSLLHRF INGDDSFRNQ RFKIVNRIVK GPWVVKAAVG NYGACLLGKA
201: LTCNYHRGDN YFEIDVDICS SAIATAILRL ALGYVTSVTI DMGFLAEAQT EEELPERLIG AVRVCQMEMS SAFVVDAPPP QQLASQPCRT LSLAKVNHDE
301: DED

Best Arabidopsis Sequence Match ( AT5G10750.1 )
(BLAST)

001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED

Arabidopsis Description

At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.