CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10168	Canola	nucleus	91.88	50.18
CDY41767	Canola	extracellular, golgi	11.69	37.89
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	35.71	36.3
CDX78399	Canola	nucleus, plastid	35.71	36.3
CDX88150	Canola	cytosol	30.84	33.69
CDX80479	Canola	cytoskeleton, cytosol, nucleus	30.84	32.42
CDX80480	Canola	cytosol	21.43	32.2
CDY05382	Canola	cytosol	27.6	31.6
CDX88148	Canola	cytosol	25.97	30.3
CDY64695	Canola	cytosol, golgi, nucleus	24.35	23.58
CDY58454	Canola	cytosol	32.79	13.19
CDX78916	Canola	mitochondrion	30.52	13.09
CDY01578	Canola	mitochondrion	30.19	12.99
CDX99399	Canola	mitochondrion	30.19	12.95
CDX98603	Canola	mitochondrion	30.19	12.95
CDY13045	Canola	mitochondrion	30.19	12.95
CDY41766	Canola	nucleus	32.79	12.88
CDY23114	Canola	mitochondrion	29.87	12.81
CDY04553	Canola	cytosol	28.9	12.18
CDX71361	Canola	cytosol	28.9	12.14
CDX67608	Canola	cytosol	27.6	11.77
CDY07523	Canola	cytosol	27.27	11.63
CDX78263	Canola	cytosol	26.95	11.5
CDX73448	Canola	cytosol	26.62	11.36
CDY02892	Canola	cytosol	25.65	10.9
CDY47710	Canola	nucleus	2.92	3.7
CDY69875	Canola	cytosol	1.3	0.87
CDX98605	Canola	cytosol	0.65	0.43

Protein Annotations

EnsemblPlants:CDY47711	EnsemblPlantsGene:GSBRNA2T00087977001	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF61	PFAM:PF07059
ProteinID:CDY47711	ProteinID:CDY47711.1	SEG:seg	UniParc:UPI0004EEED2C	UniProt:A0A078ICX1	MapMan:35.1

Description

BnaA10g04000DBnaA10g04000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICX1]

Coordinates

chrLK032731:-:63440..64958

Molecular Weight (calculated)

34006.4 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.242

Length

308 amino acids

Sequence
(BLAST)

001: MAASSGVETE PEWIKRVKSE GAVPCLSPDS KDCKNSWTTP SPNTFMVRGP HYFSDKVKVP AGDFLLKPLG FDWVKGPTKL SEILSYPSSR IRKAIDEQFQ
101: TEDATAKPFV WAFNLQLPHK DNYSAVAYFV STEPILQGSL MDQFLKGDDG FKKSRLKLIA NIVKGPWIVR KAVGEQAICV IGRALSCKYV SGENFVEIDV
201: DIGSSMVASA IVHLAFGYIT TLTVDLAFLI ESQTDAELPE KLLGAVRFSE LQTDSAVSME LSSSTSNERS SWWKSLGNGF SNLLNQDTPN MNNTSFGNLQ
301: RDEDVKKP

Best Arabidopsis Sequence Match ( AT1G06050.1 )
(BLAST)

001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT1G06050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.