Factsheet for Solyc06g053360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042135	Potato	cytosol	85.9	82.91
KRH23216	Soybean	cytosol	40.33	55.66
TraesCS7B01G203900.1	Wheat	cytosol	56.07	55.34
TraesCS7D01G299000.1	Wheat	cytosol	56.07	55.34
TraesCS7A01G303600.1	Wheat	cytosol	55.74	55.02
Bra015470.1-P	Field mustard	cytosol	55.41	54.87
HORVU7Hr1G072050.4	Barley	cytosol	56.39	54.43
AT1G06050.1	Thale cress	cytosol	55.74	54.31
TraesCS2A01G242800.1	Wheat	cytosol	54.1	53.4
VIT_05s0102g00770.t01	Wine grape	cytosol	62.62	53.06
KRH24608	Soybean	cytosol	51.15	50.32
KRH29613	Soybean	cytosol	47.87	49.32
Os08t0152600-01	Rice	cytosol	55.74	47.09
KRH10121	Soybean	endoplasmic reticulum, golgi	53.44	46.44
KXG24431	Sorghum	plastid	54.43	41.6
GSMUA_Achr1P11490_001	Banana	plastid	53.77	41.1
Zm00001d024605_P001	Maize	mitochondrion	54.43	38.25
Solyc08g068880.1.1	Tomato	mitochondrion	34.1	33.02
CDY10168	Canola	nucleus	56.07	30.32
Solyc08g006590.1.1	Tomato	cytosol	26.23	28.78
Solyc07g005000.2.1	Tomato	cytosol	29.84	12.09
Solyc04g025280.2.1	Tomato	cytosol	21.97	11.47
Solyc08g005410.2.1	Tomato	cytosol	26.56	11.42
Solyc12g096050.1.1	Tomato	mitochondrion	26.23	11.05
Solyc06g075130.2.1	Tomato	nucleus	23.61	10.14
Solyc11g069530.1.1	Tomato	cytosol	23.93	10.0

Protein Annotations

EnsemblPlants:Solyc06g053360.2.1	EnsemblPlantsGene:Solyc06g053360.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	InterPro:EDR2_C
PANTHER:PTHR12136	PANTHER:PTHR12136:SF61	PFAM:PF07059	SEG:seg	UniParc:UPI000276749F	UniProt:K4C623
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:36111231..36113786

Molecular Weight (calculated)

33639.5 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.040

Length

305 amino acids

Sequence
(BLAST)

001: MVRGPEYFST KVKVPGGEFL LKPLGFDWIK GPKKISDILN NPKHRIRMAL QDETPTGCKP FIWAFNLQVP SKENFSAVVY FVGLEPVPEG SLMEQFLKGD
101: DAFRTKRLKL IANIVKGPWI VRKAVGEQAI CVIGRALTCK YSIADDFIEV DVDIGSSVIA NAIVHLAYNY ISTLTVDLAF LIESQTQSEL PERILGAVRF
201: SELQTSSATL VEMPSNGNMG EFLPSFPSRL WKSFGNSFSH LVQADTQDGS SSSSPSLVKE VVDNGLSEEG TKKCVSPHCK YDAFLKRSMA PGSENSIIAV
301: SYCWL

Best Arabidopsis Sequence Match ( AT1G06050.1 )
(BLAST)

001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT1G06050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.