Factsheet for Solyc12g096050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00080.t01	Wine grape	mitochondrion	80.66	82.25
KRG90499	Soybean	extracellular	8.29	82.19
Solyc08g005410.2.1	Tomato	cytosol	79.97	81.66
KRH76356	Soybean	mitochondrion	80.66	80.33
KRH39650	Soybean	mitochondrion	80.25	80.03
Bra013371.1-P	Field mustard	mitochondrion	78.18	78.83
CDX78916	Canola	mitochondrion	78.18	78.83
AT4G19040.2	Thale cress	mitochondrion	78.45	78.56
CDX99399	Canola	mitochondrion	77.9	78.55
CDY01578	Canola	mitochondrion	77.62	78.49
CDX98603	Canola	mitochondrion	77.21	77.86
Bra017600.1-P	Field mustard	mitochondrion, nucleus	76.93	77.58
CDY13045	Canola	mitochondrion	76.93	77.58
CDY23114	Canola	mitochondrion	76.66	77.3
AT5G45560.1	Thale cress	mitochondrion	76.66	77.19
VIT_02s0033g00120.t01	Wine grape	cytosol	76.66	75.61
GSMUA_Achr5P17990_001	Banana	mitochondrion	75.69	75.27
EER94411	Sorghum	cytosol, nucleus, plastid	73.62	72.91
TraesCS7D01G523200.2	Wheat	plastid	72.79	72.69
TraesCS7B01G458700.1	Wheat	cytosol, plastid	72.38	72.28
VIT_02s0033g00160.t01	Wine grape	cytosol, extracellular	13.81	71.43
HORVU7Hr1G117780.12	Barley	plastid	72.65	70.79
GSMUA_Achr11P...	Banana	mitochondrion	73.76	70.45
TraesCS7A01G538600.2	Wheat	cytosol, plastid	72.93	70.03
VIT_15s0107g00410.t01	Wine grape	cytosol	50.55	65.95
Zm00001d014442_P007	Maize	cytosol, nucleus, plasma membrane, plastid	65.33	65.33
Os10t0455900-01	Rice	plasma membrane	27.07	62.22
Bra012558.1-P	Field mustard	cytosol	74.31	40.6
Solyc08g006590.1.1	Tomato	cytosol	14.09	36.69
Solyc08g068880.1.1	Tomato	mitochondrion	15.06	34.6
Solyc04g025280.2.1	Tomato	cytosol	25.97	32.19
Solyc11g069530.1.1	Tomato	cytosol	31.77	31.51
Solyc06g075130.2.1	Tomato	nucleus	30.25	30.85
Solyc07g005000.2.1	Tomato	cytosol	30.66	29.48
Solyc06g053360.2.1	Tomato	cytosol	11.05	26.23

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393	UniProt:K4DH78
PFAM:PF01852	PFAM:PF07059	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848
PANTHER:PTHR12136	PANTHER:PTHR12136:SF47	SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc12g096050.1	EnsemblPlants:Solyc12g096050.1.1	UniParc:UPI0002769B98	SEG:seg

Description

No Description!

Coordinates

chr12:-:65121616..65134920

Molecular Weight (calculated)

82576.0 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.506

Length

724 amino acids

Sequence
(BLAST)

001: MSKVVYDGWM VRYGRRKIGR SYIHMRYFVL ETRLLAYYKR KPQDNVVPIK TLPIDGNCRV EDRGLKTHHG HMVYVLSVYN KKDKYNRVTM AAFNIQEALI
101: WKEKIESIID QHQESQGTNG NKYNSFEYKS DMDNGRNASS SDHESQFSAA EDEDDSHPNL LRRTTIGRGP PESVFDWTKE IDSDLANQNG SNQVFSRKYW
201: RLLQCQNGLR IFEELLDGDL LPKSCSRAMK AVGVVEASCE NIFELVMSMD ATRFEWDCSF QYGSLVEEVD GHTAILYHRL QLDWFPTLVW PRDLCYVRYW
301: RRNDDGSYVV LFRSREHENC GPLPGYVRAH IESGGFNISP LKPINGRPRT QVQHLMQIDL KGWGVGYVSS FQQHCLLQML NSVAGLREYF SQTDERTAAP
401: RIPVMVNMTS ASVSSKRNQK LQETPHHRTR SLDQIRAANR NASMMDEYSD EEEDFQGADQ EVMPPSPERE MKRTALEEEP LDQIDFSIFS GNLRRDDRDN
501: GRNCWRISDG NNFRVRSKNF CYDKSKIPAG KPLMDLVAAD WFKDTKRMDH VARRPGCAAQ VASEKGLFSL IFNVQVPGST HYSMVFYFVM KELTSGSLLQ
601: RFVDGDDEFR NSRMKLIPSV PKGSWIVRQS VGSTPCLLGK AVDCTYIRGP KYLEIDVDIG SSTVANGVLG LVIGVITSLV VDMAFLVQGN SPDELPEQLI
701: GAVRASHIEL SAAVVPKLEP DTTE

Best Arabidopsis Sequence Match ( AT4G19040.1 )
(BLAST)

001: MSKVVYEGWM VRYGRRKIGR SYIHMRYFVL EPRLLAYYKK KPQDYQVPIK TMLIDGNCRV EDRGLKTHHG HMVYVLSVYN KKEKSHRITM AAFNIQEALM
101: WKEKIESVID QHQESQVPNG QQYVSFEYKS GMDTGRTASS SDHESQFSAA EDEEDSRRSL MRRTTIGNGP PESVLDWTKE FDAELANQNS DNQAFSRKHW
201: RLLQCQNGLR IFEELLEVDY LPRSCSRAMK AVGVVEATCE EIFELLMSMD GTRYEWDCSF QFGSLVEEVD GHTAVLYHRL LLDWFPMIVW PRDLCYVRYW
301: RRNDDGSYVV LFRSREHENC GPQPGCVRAH LESGGYNISP LKPRNGRPRT QVQHLIQIDL KGWGAGYLPA FQQHCLLQML NSVAGLREWF SQTDERGVHT
401: RIPVMVNMAS SSLSLTKSGK SLHKSAFSLD QTNSVNRNSL LMDEDSDDDD EFQIAESEQE PETSKPETDV KRPEEEPAHN IDLSCFSGNL KRNENENARN
501: CWRISDGNNF KVRGKNFGQE KRKIPAGKHL MDLVAVDWFK DSKRIDHVAR RKGCAAQVAA EKGLFSMVVN VQVPGSTHYS MVFYFVMKEL VPGSLLQRFV
601: DGDDEFRNSR LKLIPLVPKG SWIVRQSVGS TPCLLGKAVD CNYIRGPTYL EIDVDIGSST VANGVLGLVI GVITSLVVEM AFLVQANTAE EQPERLIGAV
701: RVSHIELSSA IVPNLESE

Arabidopsis Description

EDR2ENHANCED DISEASE RESISTANCE 2 [Source:TAIR;Acc:AT4G19040]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.