Factsheet for GSMUA_Achr5P14640_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18250_001	Banana	mitochondrion	36.82	86.86
Os10t0479800-01	Rice	cytosol	13.86	85.0
GSMUA_Achr4P18260_001	Banana	mitochondrion	45.65	76.89
GSMUA_Achr11P...	Banana	cytosol	53.67	70.54
GSMUA_Achr2P00220_001	Banana	nucleus	64.95	70.09
TraesCS1B01G173600.1	Wheat	nucleus	71.74	69.57
TraesCS1D01G155000.1	Wheat	nucleus	71.47	69.3
TraesCS1A01G156500.1	Wheat	nucleus	71.47	69.3
GSMUA_Achr1P08990_001	Banana	nucleus	65.08	68.72
VIT_06s0004g02720.t01	Wine grape	cytosol	68.34	68.53
EER91476	Sorghum	nucleus	71.2	68.5
Solyc11g069530.1.1	Tomato	cytosol	66.44	66.99
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	65.9	65.9
KRH22877	Soybean	plastid	65.62	65.45
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	68.75	65.21
Zm00001d032685_P001	Maize	nucleus	67.93	65.19
PGSC0003DMT400062486	Potato	nucleus	64.13	64.48
Solyc06g075130.2.1	Tomato	nucleus	62.09	64.37
CDY04553	Canola	cytosol	62.5	62.93
CDX71361	Canola	cytosol	62.64	62.89
Bra011959.1-P	Field mustard	cytosol	62.5	62.76
AT2G28320.1	Thale cress	cytosol	62.36	62.28
GSMUA_Achr5P17990_001	Banana	mitochondrion	30.71	31.04
GSMUA_Achr11P...	Banana	mitochondrion	31.11	30.21
GSMUA_Achr4P12370_001	Banana	mitochondrion	29.35	29.96
GSMUA_Achr4P05670_001	Banana	mitochondrion	29.35	29.71
GSMUA_Achr5P21900_001	Banana	cytosol	13.18	29.31
GSMUA_Achr7P15920_001	Banana	cytosol	12.36	27.74
GSMUA_Achr5P04860_001	Banana	plastid	9.92	26.07
GSMUA_Achr9P13170_001	Banana	nucleus	26.36	25.83
GSMUA_Achr1P11490_001	Banana	plastid	11.96	22.06

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	ncoils:Coil	InterPro:EDR2_C	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr5G14640_001	EnsemblPlants:GSMUA_Achr5P14640_001	EnsemblPlants:GSMUA_Achr5T14640_001	InterPro:IPR001849
InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393	UniProt:M0SYJ3	PFAM:PF00169	PFAM:PF01852
PFAM:PF07059	InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136
PANTHER:PTHR12136:SF86	SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000296F413	SEG:seg	:	:	:

Description

DUF1336 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G14640_001]

Coordinates

chr5:-:10565268..10578494

Molecular Weight (calculated)

83380.6 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.364

Length

736 amino acids

Sequence
(BLAST)

001: MEGWLYLVRH NRLGLQYSRK RYFVLRGNAL DCFKTAPTSN GEEPSRSAVV DSSIRITDNG RDILHRNVLY IFTLYNASNH KDQLKLGARS SEEAARWIRS
101: LMEAALKEGP NKEENVVSRS KRRFRMIRRS GRSQKRSVDW TVFTSVLADP MASDVIAPSP WTIVGCRNGL RLFKEARDAD SRGMYRDDHP ALMAVGVIDA
201: SSEAIFKRVM SLGSSRSEWD FCLLEGNVVE HVDGHTDIIH KKLCGDWLPW RMKRRDLLLR RYWRREDDGT YVILYHSVFH QKCPSKRGYV RACLKSGGYV
301: ISPVSQGKQS VVKHMLAVDW KFWKSYFFTS SAKYITIRML GRVAALREFF RAKLGSRACS DLSSSESTRE IELQQSEKEQ MKLEVHSADE NDNIEDSADE
401: TQRSPTKIAK ASGSFLQMND AADEFFDVIN EPEYDETEAL WPSEEGMMQP QLVQDQHHSK LSTAAVFVKK LHDIAVQKKG YIDLQEASLG ESVPCSYGLT
501: LPKDLNCSLP SSWAMADPST FLIRGKSYLH DHQKIKANGT LMQMVAADWL NSDKREDDLG GRPGGIVQKY SAQGGSEFFF IIHIQVPGST TYSLAFYYMM
601: DCPLESVPLL ERFVKGDDAY RNSRFKLIPY ISKGSWIVKQ SVGKKACLVG QALHINYFCG CNYIELGIDI GSSTVARGVV SLVLGYLSNL VIEMAFLIQG
701: NTEEELPEFL LGTCRLNHLD VSKSVPLTDD NHKIRL

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.