Factsheet for GSMUA_Achr2P00220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0479800-01	Rice	cytosol	13.49	76.67
GSMUA_Achr11P...	Banana	cytosol	61.14	74.46
GSMUA_Achr4P18250_001	Banana	mitochondrion	31.67	69.23
GSMUA_Achr4P18260_001	Banana	mitochondrion	42.96	67.05
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	70.09	64.95
VIT_06s0004g02720.t01	Wine grape	cytosol	65.69	61.04
GSMUA_Achr1P08990_001	Banana	nucleus	62.32	60.98
TraesCS1D01G155000.1	Wheat	nucleus	67.3	60.47
TraesCS1B01G173600.1	Wheat	nucleus	67.3	60.47
TraesCS1A01G156500.1	Wheat	nucleus	67.16	60.34
Solyc11g069530.1.1	Tomato	cytosol	64.22	60.0
EER91476	Sorghum	nucleus	67.01	59.74
PGSC0003DMT400062486	Potato	nucleus	62.32	58.06
Solyc06g075130.2.1	Tomato	nucleus	60.26	57.89
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	61.88	57.34
KRH22877	Soybean	plastid	61.88	57.18
Zm00001d032685_P001	Maize	nucleus	64.08	56.98
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	64.22	56.44
AT2G28320.1	Thale cress	cytosol	59.09	54.68
CDY04553	Canola	cytosol	58.5	54.58
CDX71361	Canola	cytosol	58.5	54.43
Bra011959.1-P	Field mustard	cytosol	58.36	54.3
GSMUA_Achr4P05670_001	Banana	mitochondrion	31.09	29.16
GSMUA_Achr4P12370_001	Banana	mitochondrion	30.79	29.13
GSMUA_Achr5P17990_001	Banana	mitochondrion	30.79	28.85
GSMUA_Achr11P...	Banana	mitochondrion	31.09	27.97
GSMUA_Achr5P21900_001	Banana	cytosol	12.9	26.59
GSMUA_Achr5P04860_001	Banana	plastid	10.85	26.43
GSMUA_Achr7P15920_001	Banana	cytosol	12.46	25.91
GSMUA_Achr9P13170_001	Banana	nucleus	25.51	23.17
GSMUA_Achr1P11490_001	Banana	plastid	12.46	21.3

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr2G00220_001	EnsemblPlants:GSMUA_Achr2P00220_001	EnsemblPlants:GSMUA_Achr2T00220_001	InterPro:IPR001849	InterPro:IPR002913
InterPro:IPR011993	InterPro:IPR023393	UniProt:M0S3W3	PFAM:PF00169	PFAM:PF01852	PFAM:PF07059
InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF86
SMART:SM00233	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002969B77
SEG:seg	:	:	:	:	:

Description

DUF1336 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G00220_001]

Coordinates

chr2:-:860967..871840

Molecular Weight (calculated)

77350.4 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.334

Length

682 amino acids

Sequence
(BLAST)

001: MEGWLQLVRC NRLGLHYTRK RYFVLEGNAL NCYKGVPASD REVPLRSVLI CSSTRITDNG RESIQRNVLY IFTICSTSNP SNQLKLGARS SEEAARWIRN
101: IIEAAFMENP NKEENNVACT KRRRQSFRNV RSRMHSIDWT VHSCIHADPL IFDAISPSMW MIIGCKNGLR LFKEEKDVGS PTKHRDDHPG MMAVGVIDAS
201: SEAIFQTVMS LGQSRSEWDF CLLEGNVVES LDEHTDIIHK KLRGDWLPWG MKRRDLILKR SWRKEDDGTY VILYHSVIHY KCQPERGYVR ACLKSGGYEI
301: SPVNQGKQSV VKHMLAIDWK FWKSNMFTSY ASITMKMLGR VAALREFFRA KLGNCAFSDF TLDVDENSKI ENFVEESQMS PPRHPGNGSS NQLNDAADEF
401: FDVLTESEYD QTENYYQCQD KLPTTAVFIK KLHDITEDES IGDSMPCSYG TTLPKDPSCR MACSWAMADP STFAIRGESY LHDHQKVKAN TTLMQMVAAD
501: WLKSDKREDN VGNRTGGIVQ KYAAQGGSEF FFVVHMQVPG LTTYSLALYY MMDTPLENVP FLKNFVRGDD SYRNSRFKLI PCISKGSWLV KQSVGKKACL
601: IGQALEINYF HGSNYIELAI DVGSSSIAKG VVSLVVGYLN SLVIEMAFLI QGDTQEELPE VLLGTCRLNH LDISQAVQIS SW

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.