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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • extracellular 1
  • mitochondrion 2
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:extracellular
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plasma membrane, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400018924

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20680.1 PGSC0003DMT400018924 AT4G25680.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400041419 Potato cytosol 37.23 96.8
Solyc12g005240.1.1 Tomato plastid 91.38 92.52
VIT_19s0014g05110.t01 Wine grape plastid 62.15 59.59
KRH22230 Soybean plastid 57.54 55.16
KRH27109 Soybean plastid 58.15 54.62
AT3G20680.1 Thale cress plastid 51.38 49.41
CDY53616 Canola plastid 51.38 49.41
CDY43066 Canola plastid 50.46 49.4
Bra023936.1-P Field mustard plastid 51.08 49.11
GSMUA_Achr6P00560_001 Banana plastid 51.08 48.97
TraesCS1B01G331700.1 Wheat plastid 42.46 40.47
Os05t0500400-01 Rice plastid 41.85 40.0
TraesCS1D01G319200.1 Wheat plastid 41.85 39.77
TraesCS1A01G319400.1 Wheat plastid 41.54 39.47
EES19766 Sorghum plastid 42.15 38.81
HORVU1Hr1G066510.7 Barley mitochondrion 41.85 38.42
Zm00001d038606_P001 Maize plastid 39.38 37.21
Protein Annotations
EnsemblPlants:PGSC0003DMT400056133EnsemblPlantsGene:PGSC0003DMG400021808EntrezGene:102586900InterPro:DUF1995PANTHER:PTHR36365PFAM:PF09353
PGSC:PGSC0003DMG400021808RefSeq:XP_006363520.1RefSeq:XP_006363521.1UniParc:UPI0002962AF1UniProt:M1BZ07MapMan:35.2
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021808]
Coordinates
chr12:+:8196616..8198196
Molecular Weight (calculated)
36328.2 Da
IEP (calculated)
10.017
GRAVY (calculated)
-0.152
Length
325 amino acids
Sequence
(BLAST)
001: MASNLVKFHP SLQFKLNKLH NTTSSLSFLG SKQQLNHLYH SVFFTKPKSD FSPLQCSLSS PTPPITKEDA ISQAKFSLST TLEKPLNNPK LIGKIKKLKQ
101: PRLRVEIPVV DDSPSALAQL AFDIFGEMPI KRKAPKIKIL LLWPNQTLTQ AAQTEFEKKK SSNPIIENLD ISSRTEISAD VVVFMAPEAS RLTVMKEISD
201: TLYPKPVVIF NPTWGFDEES SFGEMSGFVG SFEVVYSFMG LEVRGILSNR KGVMFKCVKD GVLSGEKWYV FVEEDGELKV VSRFKTGPSI VEVENVLYNL
301: MAVNSPITKS AKFLKDLVSN VRGKK
Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)
001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
Arabidopsis Description
AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.