CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	EER87703	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038606_P001	Maize	plastid	81.87	84.01
Os05t0500400-01	Rice	plastid	64.31	66.76
TraesCS1B01G331700.1	Wheat	plastid	63.74	65.98
TraesCS1D01G319200.1	Wheat	plastid	62.89	64.91
TraesCS1A01G319400.1	Wheat	plastid	62.61	64.62
HORVU1Hr1G066510.7	Barley	mitochondrion	61.47	61.3
PGSC0003DMT400041419	Potato	cytosol	18.98	53.6
GSMUA_Achr6P00560_001	Banana	plastid	45.61	47.49
VIT_19s0014g05110.t01	Wine grape	plastid	43.06	44.84
CDY43066	Canola	plastid	40.79	43.37
CDY53616	Canola	plastid	41.08	42.9
Solyc12g005240.1.1	Tomato	plastid	38.81	42.68
Bra023936.1-P	Field mustard	plastid	40.79	42.6
KRH22230	Soybean	plastid	40.79	42.48
AT3G20680.1	Thale cress	plastid	40.51	42.31
PGSC0003DMT400056133	Potato	plastid	38.81	42.15
KRH27109	Soybean	plastid	39.94	40.75

Protein Annotations

EnsemblPlants:EES19766	EnsemblPlantsGene:SORBI_3009G187100	EntrezGene:8067469	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:DUF1995	PANTHER:PTHR36365	PFAM:PF09353
ProteinID:EES19766	ProteinID:EES19766.1	RefSeq:XP_002441336.1	SEG:seg	UniParc:UPI0001A88FE8	UniProt:C5Z0F1
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:53975946..53977915

Molecular Weight (calculated)

37840.4 Da

IEP (calculated)

10.167

GRAVY (calculated)

-0.273

Length

353 amino acids

Sequence
(BLAST)

001: MALNNLQNLP PSKIALNPPL PPLPTRPSVF LAPRQFPPCR YLLCSKPPLP REGVQSSRSP PPGTANNNNT LSPPSSRQEA VAQARSCLAT ALQKPLNNST
101: PLKKLKRQRQ PRFRAEIPVV DESPGSLARL AFDVFSRGAG ASRKGAPARL LLVWPSAEAL SVALREFEDQ GGDSGTTAHA RLGSVAPDAL SACDAAVFLA
201: TGPAQVEQVK AAAAALEPKP VVLFNPAWSF DEEEEDDKFG AGTRGFVGSF DVVYSFTGLE VRGLLSKKRG VLLRCVQAGR FGGESWVLMV ENDDGAPEGQ
301: EFKVVSRLKK RPTIGEVETM LYNLMAANSP VTKSARFLRE MVSNVTGGKS KAQ

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.