Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20680.1 | Solyc02g082060.1.1 | AT4G25680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041419 | Potato | cytosol | 35.83 | 92.0 |
| PGSC0003DMT400056133 | Potato | plastid | 92.52 | 91.38 |
| VIT_19s0014g05110.t01 | Wine grape | plastid | 64.17 | 60.77 |
| KRH27109 | Soybean | plastid | 61.06 | 56.65 |
| KRH22230 | Soybean | plastid | 59.81 | 56.64 |
| CDY53616 | Canola | plastid | 53.27 | 50.59 |
| CDY43066 | Canola | plastid | 52.02 | 50.3 |
| Bra023936.1-P | Field mustard | plastid | 52.96 | 50.3 |
| AT3G20680.1 | Thale cress | plastid | 52.02 | 49.41 |
| GSMUA_Achr6P00560_001 | Banana | plastid | 50.78 | 48.08 |
| Os05t0500400-01 | Rice | plastid | 42.99 | 40.59 |
| TraesCS1B01G331700.1 | Wheat | plastid | 42.68 | 40.18 |
| TraesCS1D01G319200.1 | Wheat | plastid | 42.06 | 39.47 |
| HORVU1Hr1G066510.7 | Barley | mitochondrion | 43.3 | 39.27 |
| TraesCS1A01G319400.1 | Wheat | plastid | 41.74 | 39.18 |
| EES19766 | Sorghum | plastid | 42.68 | 38.81 |
| Zm00001d038606_P001 | Maize | plastid | 40.5 | 37.79 |
Protein Annotations
| EnsemblPlants:Solyc12g005240.1.1 | EnsemblPlantsGene:Solyc12g005240.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF1995 | PANTHER:PTHR36365 | PFAM:PF09353 | UniParc:UPI000276A17C |
| UniProt:K4DB62 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:155128..156093
Molecular Weight (calculated)
35876.7 Da
IEP (calculated)
9.859
GRAVY (calculated)
-0.075
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNLVKFHS SFQFKLNTTS SLSFLGSKQQ LNNLYHSIFF TKPKSDFSPL QCSLSSPTPP ITKEDAVSQA KFSLSTTLEK PLNNPKLIGK IKKLKQPRFR
101: VEIPVVDDSP SALAQLAFDI FGEMPIKRKA PNIKILLLWP NQTLTQAAQA EFEKKKSSNP IIENLDISSR IEISADVVVF MAPEASILTV MKEISDTLYP
201: MPVVIFNPKW GFDEESSFGE LSGFVGSFEV VYSFMGLEVR GILSNRKGVM FKCVKDGVLS GEKWYVFVEE DGELKVVSRF KARPSIVEVE NVLYNLMAVN
301: SPITKSAKFL KDLVSNVRGK K
101: VEIPVVDDSP SALAQLAFDI FGEMPIKRKA PNIKILLLWP NQTLTQAAQA EFEKKKSSNP IIENLDISSR IEISADVVVF MAPEASILTV MKEISDTLYP
201: MPVVIFNPKW GFDEESSFGE LSGFVGSFEV VYSFMGLEVR GILSNRKGVM FKCVKDGVLS GEKWYVFVEE DGELKVVSRF KARPSIVEVE NVLYNLMAVN
301: SPITKSAKFL KDLVSNVRGK K
001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
Arabidopsis Description
AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.