Factsheet for VIT_19s0014g05110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041419	Potato	cytosol	27.14	73.6
Solyc12g005240.1.1	Tomato	plastid	60.77	64.17
KRH22230	Soybean	plastid	63.42	63.42
KRH27109	Soybean	plastid	64.01	62.72
PGSC0003DMT400056133	Potato	plastid	59.59	62.15
AT3G20680.1	Thale cress	plastid	56.05	56.21
CDY53616	Canola	plastid	56.05	56.21
CDY43066	Canola	plastid	54.87	56.02
Bra023936.1-P	Field mustard	plastid	55.46	55.62
GSMUA_Achr6P00560_001	Banana	plastid	53.39	53.39
TraesCS1B01G331700.1	Wheat	plastid	43.95	43.7
Os05t0500400-01	Rice	plastid	43.36	43.24
EES19766	Sorghum	plastid	44.84	43.06
TraesCS1A01G319400.1	Wheat	plastid	43.07	42.69
TraesCS1D01G319200.1	Wheat	plastid	42.77	42.4
HORVU1Hr1G066510.7	Barley	mitochondrion	44.25	42.37
Zm00001d038606_P001	Maize	plastid	42.48	41.86

Protein Annotations

EntrezGene:100253680	wikigene:100253680	MapMan:35.2	ProteinID:CCB46472	ProteinID:CCB46472.1	InterPro:DUF1995
UniProt:F6H2C1	EMBL:FN595229	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	EntrezGene:LOC100253680	wikigene:LOC100253680	PFAM:PF09353	PANTHER:PTHR36365
UniParc:UPI0001985586	ArrayExpress:VIT_19s0014g05110	EnsemblPlantsGene:VIT_19s0014g05110	EnsemblPlants:VIT_19s0014g05110.t01	RefSeq:XP_002280047	RefSeq:XP_002280047.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5405275..5406370

Molecular Weight (calculated)

37685.6 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.199

Length

339 amino acids

Sequence
(BLAST)

001: MASNLLKIHL QTFRSTNPST PFPVAKILFQ SLSFPTEQHH QHQYHVSFFP QQLPSKRKIS PPPLQSSLSS STPPTSREDA ILQAKTCLST TLEKPLNNPK
101: LTGKLKKQKQ PKFRVEIPVI DDSPASLSQL AFDVFGDIPN KRKGSPVKIL ILWPNPTLTE AAIKTFELHS TNHVEHMDIS SITNESNRIL NSSDVAIFLA
201: PETSQLAVMK TVTETLYPKP IVIFNPKWAF EDESNFGGLS GFVGSFEVIY SFMGLEVRGV LSKRKGVVFK CVRDGVLSGE KWTVLVEEEG ELKVVSRFKA
301: RPAIGEVENV LYNLMAINSP ITKSAKFLRG LVSNVTGKK

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.