Factsheet for PGSC0003DMT400021415

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006409
PGSC0003DMT400065786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT2G34460.1	PGSC0003DMT400006409	AT1G55190.1	21798944
AT2G34460.1	PGSC0003DMT400006409	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070770.2.1	Tomato	plastid	96.23	96.23
VIT_10s0003g03090.t01	Wine grape	cytosol	68.49	80.0
KRH42344	Soybean	plastid	68.84	69.31
KRH58466	Soybean	plastid	68.15	68.15
CDY43675	Canola	plastid	62.33	64.77
AT2G34460.1	Thale cress	plastid	61.3	63.93
Bra021912.1-P	Field mustard	plastid	62.33	62.98
EES15131	Sorghum	plastid	57.53	59.36
TraesCS7D01G346000.1	Wheat	plastid	57.88	59.3
Zm00001d031799_P001	Maize	plastid	57.19	59.01
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	56.85	58.25
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	56.85	58.25
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	56.85	58.25
Os06t0360300-01	Rice	plastid	56.85	57.04
GSMUA_Achr4P31210_001	Banana	plastid	28.08	46.59
PGSC0003DMT400058473	Potato	cytosol	21.58	24.32
PGSC0003DMT400022763	Potato	extracellular	23.29	22.82
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	32.53	13.91

Protein Annotations

EnsemblPlants:PGSC0003DMT400021415	EnsemblPlantsGene:PGSC0003DMG400008307	EntrezGene:102587902	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	PFAM:PF13460	PGSC:PGSC0003DMG400008307	SUPFAM:SSF51735	UniParc:UPI0002961432
UniProt:M1AF31	MapMan:35.1	:	:	:	:

Description

3-beta hydroxysteroid dehydrogenase/isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400008307]

Coordinates

chr2:-:29922213..29930176

Molecular Weight (calculated)

31512.0 Da

IEP (calculated)

8.207

GRAVY (calculated)

0.037

Length

292 amino acids

Sequence
(BLAST)

001: MATATGLFFL TTSAFSVTSK RPSVSLLVNK VHSFRLRAAN IEGSEIEGKE EVGISEKKKI FVAGATGNTG KRIVEQLLAK GFAVKAGVLD VDKAKSTLPG
101: QNPDLQIVKA DVTEGSARLA DAIGNDSDAV ICATGFRRSL DFLAPWKVDN FGTVNLVEAC RTLGVKRFLL VSSILVNGAA MGQLFNPAYV FLNVLGLTLI
201: AKLQAEQYIR RSGINYTIIR PGGLKNDPPQ GNIVMEQEDT LFRGSISRDQ VAEVAVEALL HPESHYKVVE IVASTDAPKR SFEELFGSIE QQ

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.