Factsheet for PGSC0003DMT400022763

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 6
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010930.2.1	Tomato	extracellular	82.21	96.08
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	71.14	83.14
KRG99976	Soybean	nucleus	70.81	82.75
Zm00001d035672_P001	Maize	peroxisome	31.21	75.61
TraesCS1D01G030600.1	Wheat	golgi	71.81	71.57
TraesCS1B01G037100.1	Wheat	plastid	71.81	71.33
TraesCS1A01G030100.1	Wheat	plastid	71.14	70.9
Zm00001d011069_P001	Maize	plastid	69.8	69.8
Bra005175.1-P	Field mustard	plastid	75.17	69.57
EES17563	Sorghum	plastid	69.46	69.23
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	75.84	68.69
AT2G37660.1	Thale cress	plastid	74.5	68.31
KRH49116	Soybean	nucleus	75.5	67.98
CDY65254	Canola	plastid	73.49	67.59
HORVU1Hr1G004430.3	Barley	plastid	71.81	67.51
Bra017165.1-P	Field mustard	plastid	73.15	66.46
CDX93359	Canola	plastid	72.82	65.96
Os05t0110300-01	Rice	extracellular	68.12	64.65
CDX91377	Canola	cytosol	58.72	62.5
CDX74941	Canola	plastid	46.64	48.26
PGSC0003DMT400058473	Potato	cytosol	22.82	26.25
PGSC0003DMT400021415	Potato	plastid	22.82	23.29
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	24.83	10.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400022763	EnsemblPlantsGene:PGSC0003DMG400008830	EntrezGene:102600094	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR14194	PANTHER:PTHR14194:SF61	PFAM:PF13460	PGSC:PGSC0003DMG400008830	RefSeq:XP_006341016.1	SUPFAM:SSF51735
UniParc:UPI0002951C78	UniProt:M1AH70	MapMan:35.1	:	:	:

Description

NAD-dependent epimerase/dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400008830]

Coordinates

chr9:+:1643834..1650345

Molecular Weight (calculated)

32472.0 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.301

Length

298 amino acids

Sequence
(BLAST)

001: MAALTRVSPY QCHKLSLVNQ RLPELFVSFP KKNKKFCKFS VLAMADLNTS TVLVTGAGGR TGSIVYKKLK ERSENYTARG LVRTEESKQK IGGADDVYIG
101: DIRNTESLIP AIQGIDALVI LTSAVPKMKP GFDPTKGGRP EFYFEDGANP EQVDWIGQKN QIDAAKAAGV KQIVLVGSMG GTNPNHPLNS LGNGNILIWK
201: RKAEQYLADS GIPYTIIRAG GLQDKEGGIR ELLVGKDDEL LETDTKTVAR ADVAEVCIQA LQYEEAKFKA FDLASKPEGT GTPTKDFKTL FAQIATRF

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.