Factsheet for VIT_08s0007g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99976	Soybean	nucleus	66.26	85.49
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	65.65	84.71
Solyc09g010930.2.1	Tomato	extracellular	65.35	84.31
PGSC0003DMT400022763	Potato	extracellular	68.69	75.84
Zm00001d035672_P001	Maize	peroxisome	28.27	75.61
KRH49116	Soybean	nucleus	74.16	73.72
TraesCS1B01G037100.1	Wheat	plastid	67.17	73.67
TraesCS1D01G030600.1	Wheat	golgi	66.87	73.58
Zm00001d011069_P001	Maize	plastid	66.57	73.49
EES17563	Sorghum	plastid	66.57	73.24
TraesCS1A01G030100.1	Wheat	plastid	66.57	73.24
Bra005175.1-P	Field mustard	plastid	67.48	68.94
HORVU1Hr1G004430.3	Barley	plastid	66.26	68.77
Os05t0110300-01	Rice	extracellular	65.35	68.47
Bra017165.1-P	Field mustard	plastid	67.78	67.99
CDY65254	Canola	plastid	66.87	67.9
CDX93359	Canola	plastid	66.87	66.87
AT2G37660.1	Thale cress	plastid	65.35	66.15
CDX91377	Canola	cytosol	51.98	61.07
CDX74941	Canola	plastid	42.86	48.96
VIT_10s0003g03090.t01	Wine grape	cytosol	20.36	26.8
VIT_06s0009g03780.t01	Wine grape	plastid	24.62	24.11
VIT_03s0063g02020.t01	Wine grape	plastid	20.97	13.04

Protein Annotations

EntrezGene:100247687	wikigene:100247687	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB55583	ProteinID:CCB55583.1
UniProt:F6HL96	EMBL:FN595991	EntrezGene:LOC100247687	wikigene:LOC100247687	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF61	SUPFAM:SSF51735	TIGR:TC63232	UniParc:UPI00021098F9
ArrayExpress:VIT_08s0007g00530	EnsemblPlantsGene:VIT_08s0007g00530	EnsemblPlants:VIT_08s0007g00530.t01	unigene:Vvi.2179	RefSeq:XP_002267965	RefSeq:XP_002267965.1
RefSeq:XP_010654260.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:14801858..14806476

Molecular Weight (calculated)

36066.1 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.283

Length

329 amino acids

Sequence
(BLAST)

001: MATATRVPLV STTSSRLRHC HQSNWVESSF PLRRQPGSYR LFNKSLCYSS SSSSSSFLAT TNRRGFRRLG VVVSAAMADL PTVLVTGAGG RTGQIVYKKL
101: KERADQFVAR GLVRTEESKE KIGGADDVLV GDIRNADSIV PAIQGVDALI ILTSAVPRMK PGFDPTKGQR PEFYFEEGAF PEQVDWIGQK NQIDVAKTAG
201: VKHIVLVGSM GGTDLNHPLN SLGNGNILVW KRKAEQYLAD SGIPYTIIRA GGLQDREGGI RELLVGKDDE LLKTETRTIT RNDVAEVCIQ ALQFEEAKFK
301: AFDLASNPER VGTPTKDFKA LFSQISTRF

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.