Factsheet for VIT_06s0009g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038694_P001	Maize	cytosol	23.81	74.07
Bra024000.1-P	Field mustard	plastid	71.43	72.73
Zm00001d040326_P001	Maize	plastid	48.51	71.49
CDY68555	Canola	plastid	70.24	71.3
CDY13439	Canola	plastid	70.24	71.08
PGSC0003DMT400058473	Potato	cytosol	54.76	71.04
Solyc01g008920.2.1	Tomato	plastid	67.56	69.63
GSMUA_Achr3P17500_001	Banana	plastid	69.35	69.35
AT4G31530.2	Thale cress	plastid	69.05	68.64
EER92259	Sorghum	plastid	65.77	65.58
Zm00001d047463_P001	Maize	plastid	65.48	65.48
Zm00001d046769_P001	Maize	cytosol	37.2	65.44
Zm00001d029200_P001	Maize	plastid	65.18	64.99
KRH07338	Soybean	plastid	63.99	64.56
TraesCS4D01G166200.1	Wheat	plastid	62.5	64.22
TraesCS4D01G124000.1	Wheat	plastid	61.9	63.61
TraesCS6B01G093300.1	Wheat	plastid	62.2	63.53
Os03t0355900-00	Rice	cytosol	3.57	63.16
TraesCS4A01G189000.1	Wheat	plastid	61.31	63.0
KRH66235	Soybean	plastid	65.18	61.86
Zm00001d037076_P001	Maize	cytosol	21.73	59.35
HORVU2Hr1G069110.2	Barley	plastid	61.31	58.36
Zm00001d032783_P001	Maize	plastid	44.64	42.73
VIT_10s0003g03090.t01	Wine grape	cytosol	22.32	30.0
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	24.11	24.62
VIT_03s0063g02020.t01	Wine grape	plastid	21.43	13.61

Protein Annotations

EntrezGene:100255039	wikigene:100255039	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI24210	ProteinID:CBI24210.3
UniProt:D7T131	EMBL:FN595504	EntrezGene:LOC100255039	wikigene:LOC100255039	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13460	PANTHER:PTHR10366	PANTHER:PTHR10366:SF384	SUPFAM:SSF51735	UniParc:UPI0001983894	ArrayExpress:VIT_06s0009g03780
EnsemblPlantsGene:VIT_06s0009g03780	EnsemblPlants:VIT_06s0009g03780.t01	unigene:Vvi.20522	RefSeq:XP_002274972	RefSeq:XP_002274972.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:17103606..17113806

Molecular Weight (calculated)

36588.0 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.224

Length

336 amino acids

Sequence
(BLAST)

001: MATNLQLLPI HGFPLSSWKC PKYPQRVPVF SLQPLNPPPP PPPSPKSILS SRRRASVAHA VKEEVIQSPN SDPALDSKTS PPASSKLVLV VGGSGGVGQL
101: IVASLLDRNI KSRLLLRDPE KATSLFGKQD EETLQVYKGD TRNLEDLNSS IFEGVTHVIC CTGTTAFPSK RWDGDNTPEK VDWEGVRNLV SALPSSLKRI
201: VLVSSVGVTK FNELPWSIMN LFGVLKYKKM GEDFLCSSGL PFTIIRAGRL TDGPYTSYDL NTLLKATAGQ RRAVLMGQGD KLVGEVSRIV VAEACIQALD
301: IEFTEGKIYE INSVEGDGPG SDPQKWQELF KTAEAK

Best Arabidopsis Sequence Match ( AT4G31530.1 )
(BLAST)

001: MATTTNLSFA PPSYSRFAAT KSQIRNPLFT SPLPLPSSFF LVRNEASLSS SITPVQAFTE EAVDTSDLAS SSSKLVLVVG GTGGVGQLVV ASLLKRNIRS
101: RLLLRDLDKA TKLFGKQDEY SLQVVKGDTR NAEDLDPSMF EGVTHVICTT GTTAFPSKRW NEENTPEKVD WEGVKNLISA LPSSVKRVVL VSSVGVTKSN
201: ELPWSIMNLF GVLKYKKMGE DFLRDSGLPF TIIRPGRLTD GPYTSYDLNT LLKATAGERR AVVIGQGDNL VGEVSRLVVA EACIQALDIE FTQGKAYEIN
301: SVKGDGPGSD PQQWRELFKA AESK

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JSP1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.