CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029200_P001	Maize	plastid	94.66	94.66
Os03t0355900-00	Rice	cytosol	4.75	84.21
Zm00001d040326_P001	Maize	plastid	55.19	81.58
Zm00001d046769_P001	Maize	cytosol	43.62	76.96
TraesCS4D01G166200.1	Wheat	plastid	70.92	73.09
TraesCS4D01G124000.1	Wheat	plastid	70.62	72.78
TraesCS6B01G093300.1	Wheat	plastid	70.92	72.64
TraesCS4A01G189000.1	Wheat	plastid	70.03	72.17
PGSC0003DMT400058473	Potato	cytosol	54.6	71.04
Bra024000.1-P	Field mustard	plastid	66.77	68.18
HORVU2Hr1G069110.2	Barley	plastid	70.92	67.71
CDY68555	Canola	plastid	66.47	67.67
CDY13439	Canola	plastid	66.17	67.17
GSMUA_Achr3P17500_001	Banana	plastid	66.47	66.67
VIT_06s0009g03780.t01	Wine grape	plastid	65.58	65.77
Solyc01g008920.2.1	Tomato	plastid	63.2	65.34
AT4G31530.2	Thale cress	plastid	64.69	64.5
KRH07338	Soybean	plastid	61.72	62.46
KRH66235	Soybean	plastid	62.02	59.04
Zm00001d032783_P001	Maize	plastid	48.37	46.44
KXG37247	Sorghum	plastid	23.15	30.35
EES15131	Sorghum	plastid	24.93	29.68
EES17563	Sorghum	plastid	24.04	27.09
EER97808	Sorghum	plastid	19.88	16.96

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:8082640	UniProt:C5WZQ5	EnsemblPlants:EER92259	ProteinID:EER92259
ProteinID:EER92259.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460
PANTHER:PTHR10366	PANTHER:PTHR10366:SF384	EnsemblPlantsGene:SORBI_3001G368600	SUPFAM:SSF51735	UniParc:UPI0001A820EE	RefSeq:XP_002465261.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:65730425..65734584

Molecular Weight (calculated)

36146.3 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.172

Length

337 amino acids

Sequence
(BLAST)

001: MAVGCFNPVL SPLVPSPPGR RVRAALRSQS HQPTAVSLRL LPCGVAAGRG TRRLVAAAAA ESQAVQEQPA RTEESGEAGG AGAAEASSKL VLVVGGTGGV
101: GQLVVASLLS RNIKSRLLLR DPEKASSLFG KQDDSVLQVY KADTRNSNDL DPQMFEGVTH VICCTGTTAF PSKRWDGDNT PERVDWDGIR NLVSALPQTI
201: KRLVLVSSVG VTKYNEIPWS IMNLFGVLKY KKMGEDFVRN SGIPFTIIRP GRLTDGPYTS YDLNTLLKAT AGERRAVVIG KGDKLVGEVS RLVVAEACIQ
301: ALDIESTEGQ IYEINSVKGE GPGTDPEKWE ELFRSVQ

Best Arabidopsis Sequence Match ( AT4G31530.1 )
(BLAST)

001: MATTTNLSFA PPSYSRFAAT KSQIRNPLFT SPLPLPSSFF LVRNEASLSS SITPVQAFTE EAVDTSDLAS SSSKLVLVVG GTGGVGQLVV ASLLKRNIRS
101: RLLLRDLDKA TKLFGKQDEY SLQVVKGDTR NAEDLDPSMF EGVTHVICTT GTTAFPSKRW NEENTPEKVD WEGVKNLISA LPSSVKRVVL VSSVGVTKSN
201: ELPWSIMNLF GVLKYKKMGE DFLRDSGLPF TIIRPGRLTD GPYTSYDLNT LLKATAGERR AVVIGQGDNL VGEVSRLVVA EACIQALDIE FTQGKAYEIN
301: SVKGDGPGSD PQQWRELFKA AESK

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JSP1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.