Factsheet for Zm00001d032783_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040326_P001	Maize	plastid	45.01	69.3
Zm00001d038694_P001	Maize	cytosol	18.23	59.26
Zm00001d046769_P001	Maize	cytosol	28.77	52.88
PGSC0003DMT400058473	Potato	cytosol	38.75	52.51
Zm00001d029200_P001	Maize	plastid	47.29	49.26
EER92259	Sorghum	plastid	46.44	48.37
Zm00001d047463_P001	Maize	plastid	46.15	48.21
TraesCS4D01G166200.1	Wheat	plastid	43.87	47.09
TraesCS4D01G124000.1	Wheat	plastid	43.59	46.79
TraesCS6B01G093300.1	Wheat	plastid	43.59	46.5
TraesCS4A01G189000.1	Wheat	plastid	43.3	46.48
Solyc01g008920.2.1	Tomato	plastid	42.73	46.01
GSMUA_Achr3P17500_001	Banana	plastid	43.3	45.24
VIT_06s0009g03780.t01	Wine grape	plastid	42.73	44.64
KRH07338	Soybean	plastid	41.6	43.84
CDY68555	Canola	plastid	41.31	43.81
HORVU2Hr1G069110.2	Barley	plastid	43.87	43.63
Bra024000.1-P	Field mustard	plastid	40.74	43.33
CDY13439	Canola	plastid	40.74	43.07
AT4G31530.2	Thale cress	plastid	41.03	42.6
KRH66235	Soybean	plastid	42.73	42.37
Os03t0355900-00	Rice	cytosol	1.99	36.84
Zm00001d037076_P001	Maize	cytosol	12.54	35.77
Zm00001d031799_P001	Maize	plastid	16.81	20.85
Zm00001d034665_P001	Maize	plastid	15.1	20.62
Zm00001d035672_P001	Maize	peroxisome	6.84	19.51
Zm00001d011069_P001	Maize	plastid	15.1	17.79
Zm00001d007921_P001	Maize	plastid	13.96	15.56

Protein Annotations

EnsemblPlants:Zm00001d032783_P001	EnsemblPlants:Zm00001d032783_T001	EnsemblPlantsGene:Zm00001d032783	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR10366	PANTHER:PTHR10366:SF384	PFAM:PF13460	ProteinID:ONM06047.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0008453F60	UniProt:A0A1D6KTY6	MapMan:35.2	:	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chr1:+:238010904..238015506

Molecular Weight (calculated)

39744.0 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.589

Length

351 amino acids

Sequence
(BLAST)

001: MWCEWHSSYP IVALPLPLPA LSVNWEKTER DHAREKSSRG KFRQHGRVIN PEEFYIKSRL LLRDPEMAST LFGKQDESVL QGVTHVICCT GTTAFPSKRW
101: DGENTPERVD WDGIRNLVSA LPQTIKRLVL VSSIGVTKYN EIPWSIMNLF GVLKYKKMGE DFVRNSGIPF TIIMPGRLTD GPYTSYDLNT LLKATTGERR
201: AVHELHRLYH VHKTLMAECD SHRYQPRAEG THEVVQGSRS NLNCSPSTLR TNQSALLGNA QYPAPQQVHE DLSLHECKPV NCLSLFGEEN SAAKERFHGE
301: NHKSVEDESW SAAVESDLDL KLSIGPSSHS PETPRWLFSG SMERNPSGQH R

Best Arabidopsis Sequence Match ( AT4G31530.2 )
(BLAST)

001: MATTTNLSFA PPSYSRFAAT KSQIRNPLFT SPLPLPSSFF LVRNEASLSS SITPVQAFTE EAVDTSDLAS SSSKLVLVVG GTGGVGQLVV ASLLKRNIRS
101: RLLLRDLDKA TKLFGKQDEY SLQVVKGDTR NAEDLDPSMF EGVTHVICTT GTTAFPSKRW NEENTPEKVD WEGVKNLISA LPSSVKRVVL VSSVGVTKSN
201: ELPWSIMNLF GVLKYKKMGE DFLRDSGLPF TIIRPGRLTD GPYTSYDLNT LLKATAGERR AVVIGQGDNL VGEVSRLVVA EACIQALDIE FTQGKAYEIN
301: SVKVPQTVSL KFEQSGNGDG PGSDPQQWRE LFKAAESK

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JSP1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.