Factsheet for GSMUA_Achr3P17500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0355900-00	Rice	cytosol	4.46	78.95
Zm00001d038694_P001	Maize	cytosol	24.4	75.93
Zm00001d040326_P001	Maize	plastid	49.4	72.81
VIT_06s0009g03780.t01	Wine grape	plastid	69.35	69.35
PGSC0003DMT400058473	Potato	cytosol	52.68	68.34
Zm00001d046769_P001	Maize	cytosol	38.69	68.06
Bra024000.1-P	Field mustard	plastid	66.07	67.27
CDY13439	Canola	plastid	66.37	67.17
Zm00001d047463_P001	Maize	plastid	66.96	66.96
CDY68555	Canola	plastid	65.77	66.77
EER92259	Sorghum	plastid	66.67	66.47
Zm00001d029200_P001	Maize	plastid	66.67	66.47
Solyc01g008920.2.1	Tomato	plastid	62.5	64.42
AT4G31530.2	Thale cress	plastid	63.69	63.31
TraesCS4D01G166200.1	Wheat	plastid	61.31	63.0
TraesCS4A01G189000.1	Wheat	plastid	60.71	62.39
TraesCS4D01G124000.1	Wheat	plastid	60.71	62.39
TraesCS6B01G093300.1	Wheat	plastid	61.01	62.31
Zm00001d037076_P001	Maize	cytosol	22.32	60.98
KRH07338	Soybean	plastid	60.12	60.66
HORVU2Hr1G069110.2	Barley	plastid	61.01	58.07
KRH66235	Soybean	plastid	60.42	57.34
Zm00001d032783_P001	Maize	plastid	45.24	43.3
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	22.02	29.02
GSMUA_Achr4P31210_001	Banana	plastid	10.42	19.89
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	20.54	13.66

Protein Annotations

EnsemblPlants:GSMUA_Achr3P17500_001	EnsemblPlants:GSMUA_Achr3T17500_001	EnsemblPlantsGene:GSMUA_Achr3G17500_001	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF384	PFAM:PF13460	SEG:seg
SUPFAM:SSF51735	UniParc:UPI00029617B4	UniProt:M0SFG6	MapMan:35.2	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_9.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G17500_001]

Coordinates

chr3:-:19055433..19060305

Molecular Weight (calculated)

36189.5 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.103

Length

336 amino acids

Sequence
(BLAST)

001: MALKLSSQLP LPFQKSHKGS QRWPIPHPIP STNLAGCGCS ILPSGVTSLS RRSGGRGVVH AVKEEETLPS ALAEADVSKT PSSSSKVVLV IGGTGGVGQL
101: IVASLLSRNI KSRLLLRDPS KAISLFGIQD ENIIEVHKGD TRNPSDLDST IFEGVTHVIC CTGTTAFPSK RWDGDNTPER VDWEGIRNLV LALPPTIERL
201: VLVSSVGVTK YNELPWSIMN LFGVLKFKKM GEDFVRSSGL PFTIIRAGRL TDGPYTSYDL NTLLKATAGK RRAVVISQGD ELVGEVSRLV VAEACIQALD
301: IECTKGQIYE INSIEGDGPG SDPEKWKELF KAAEAN

Best Arabidopsis Sequence Match ( AT4G31530.1 )
(BLAST)

001: MATTTNLSFA PPSYSRFAAT KSQIRNPLFT SPLPLPSSFF LVRNEASLSS SITPVQAFTE EAVDTSDLAS SSSKLVLVVG GTGGVGQLVV ASLLKRNIRS
101: RLLLRDLDKA TKLFGKQDEY SLQVVKGDTR NAEDLDPSMF EGVTHVICTT GTTAFPSKRW NEENTPEKVD WEGVKNLISA LPSSVKRVVL VSSVGVTKSN
201: ELPWSIMNLF GVLKYKKMGE DFLRDSGLPF TIIRPGRLTD GPYTSYDLNT LLKATAGERR AVVIGQGDNL VGEVSRLVVA EACIQALDIE FTQGKAYEIN
301: SVKGDGPGSD PQQWRELFKA AESK

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JSP1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.