Factsheet for GSMUA_Achr8P04880_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007921_P001	Maize	plastid	37.82	60.63
VIT_03s0063g02020.t01	Wine grape	plastid	55.45	52.93
Os10t0100300-01	Rice	nucleus, plastid	50.1	50.91
KRH24515	Soybean	plastid	51.68	49.43
EER97808	Sorghum	plastid	38.61	49.37
KRH24514	Soybean	plastid	38.22	45.95
KRH29518	Soybean	vacuole	50.49	45.78
TraesCS5B01G270200.1	Wheat	plastid	49.51	44.01
TraesCS5D01G277900.1	Wheat	plastid	48.51	43.67
AT3G18890.1	Thale cress	plastid	53.86	42.43
CDX99298	Canola	plastid	52.48	41.34
CDX92286	Canola	plastid	52.48	41.28
Bra022369.1-P	Field mustard	plastid	52.28	41.06
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	53.86	39.82
KRH29515	Soybean	plastid	15.05	39.18
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	48.91	38.18
Solyc10g051110.1.1	Tomato	plastid	53.47	36.78
HORVU5Hr1G074000.3	Barley	mitochondrion	48.32	35.62
GSMUA_Achr4P31210_001	Banana	plastid	8.12	23.3
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	11.68	23.14
GSMUA_Achr3P17500_001	Banana	plastid	13.66	20.54

Protein Annotations

EnsemblPlants:GSMUA_Achr8P04880_001	EnsemblPlants:GSMUA_Achr8T04880_001	EnsemblPlantsGene:GSMUA_Achr8G04880_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000296CB81
UniProt:M0TMP1	MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	:	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:Projected from Arabidopsis thaliana (AT3G18890) TAIR;Acc:AT3G18890]

Coordinates

chr8:-:3227849..3234596

Molecular Weight (calculated)

54937.8 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.246

Length

505 amino acids

Sequence
(BLAST)

001: MPFGFWLICC KLLCCTSFNA VFFLLREFIY SSSYPGLLHF VSDMFSVVRS TQAAVSSDAK AGEVSKQEMS SKDKDLVFVA GATGRVGSRL VRELLKLGFR
101: VRAGVRSAQR AEPLVQSVQQ MKPDVGTGPS GTEPAAKLEL VECDLEKQGD IGPAIGNAST VLCCIGASEK EISDITGPYR IDYKATENLI KAATVAKVDH
201: FILLTSLGTN KFGLPAAILN LFWGVLFWKR KAEEALIASG LPYTIVRPGG MERPTDSYKE THNIVLANED TYFGGQVSNL QVAELMAFMA KNRKISYCKV
301: VEVIAETTAP LLPMDELLSK IPSQREPPAE IVKDVARSST EPKPTKLVVE EEPEKTEGQK TIPLSPYYMY ADLKPPSSPT PIPSATPGSS KEKQVEFVQA
401: KSEPEPTSTS LSASKLSEDV AKKEAGQVLA QKTRPLSPYT AYEDLKPPSS PSPVDYKAEN CKATTNPVIP ESPEVPHGNS SYRSPFPVYE DLRPPASPAP
501: SLPKY

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.