Factsheet for Bra022369.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92286	Canola	plastid	96.89	97.04
AT3G18890.1	Thale cress	plastid	78.38	78.63
Zm00001d007921_P001	Maize	plastid	27.84	56.83
VIT_03s0063g02020.t01	Wine grape	plastid	46.35	56.33
KRH24515	Soybean	plastid	44.48	54.17
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	41.06	52.28
KRH29518	Soybean	vacuole	43.7	50.45
Os10t0100300-01	Rice	nucleus, plastid	38.1	49.3
EER97808	Sorghum	plastid	29.55	48.1
TraesCS5D01G277900.1	Wheat	plastid	41.37	47.42
TraesCS5B01G270200.1	Wheat	plastid	41.84	47.36
KRH24514	Soybean	plastid	30.79	47.14
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	46.03	43.34
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	41.52	41.27
KRH29515	Soybean	plastid	12.44	41.24
Solyc10g051110.1.1	Tomato	plastid	46.19	40.46
HORVU5Hr1G074000.3	Barley	mitochondrion	41.06	38.54
Bra021912.1-P	Field mustard	plastid	15.71	34.95
Bra009604.1-P	Field mustard	endoplasmic reticulum, peroxisome, plastid	9.95	25.3
Bra024000.1-P	Field mustard	plastid	11.98	23.33
Bra005175.1-P	Field mustard	plastid	11.2	22.36
Bra017165.1-P	Field mustard	plastid	10.42	20.43

Protein Annotations

MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra022369	EnsemblPlants:Bra022369.1	EnsemblPlants:Bra022369.1-P
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	UniProt:M4E0S2
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	SUPFAM:SSF51735
UniParc:UPI000254805B	SEG:seg	:	:	:	:

Description

AT3G18890 (E=1e-201) | binding / catalytic/ coenzyme binding

Coordinates

chrA05:-:18129513..18132748

Molecular Weight (calculated)

68658.5 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.369

Length

643 amino acids

Sequence
(BLAST)

001: MEGTSFLRGQ PLTTVPSLPR KRFLLQGWKS NQIVRFSGLK NQSDSRKSRS FFDLSLRASD KGPIKASSAV TDASPTNSEF KEQDIVFVAG ATGKVGSRTV
101: RELLKLGFRV RAGVRSAQRA KGLVQSVKDM NTDEGTQPVE KLEVVECDLE KKDSIQPALG NASVVICCIG ASEKEISDIT GPYRIDYLAT KNLVDAATSA
201: KVNNFILVTS LGTNKFGFPA AILNLFWGVL CWKRKAEEAL IASGLNYAIV RPGGMERPTD AYKETHNLTL ALDDTLFGGQ VSNLQVAELL ACMAKNPQLS
301: CSKIVEVVAE TTAPLTPIEK LFEKIPSKRP YVPPPKESVA AKEVPPVPAE PVKQESVAAK VVTPVPAEPI TKEPTAPKED EAPAQVKEVK PRPLSPYAAY
401: EDLKPPTSPI PATALGATKA KEVDATPVPE VEATQAPVEA ANVAPPPENP VEVNVPVVEE VKQVEEKKER PLSPYASYEN LKPPSSPTPK ASGIQKSDTL
501: APIPTDSDTG ESSTVATTVT EEAEAPPAIP KMRPLSPYAA YADLKPPTSP TPASTGPKKT APAEEISELP GGNDVLQTVD GSVITTESAS VPETETVNSV
601: TDTSLTPEES AADQPKPRPL SPYTMYEDMK PPTSPLPSPV INH

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.