Factsheet for VIT_03s0063g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24515	Soybean	plastid	61.25	61.36
Zm00001d007921_P001	Maize	plastid	34.4	57.78
KRH29518	Soybean	vacuole	59.74	56.73
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	52.93	55.45
KRH24514	Soybean	plastid	42.72	53.81
KRH29515	Soybean	plastid	19.66	53.61
Os10t0100300-01	Rice	nucleus, plastid	47.45	50.5
EER97808	Sorghum	plastid	35.73	47.85
AT3G18890.1	Thale cress	plastid	57.28	47.27
CDX92286	Canola	plastid	56.71	46.73
CDX99298	Canola	plastid	56.33	46.49
Bra022369.1-P	Field mustard	plastid	56.33	46.35
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	58.22	45.1
TraesCS5D01G277900.1	Wheat	plastid	46.88	44.21
TraesCS5B01G270200.1	Wheat	plastid	47.45	44.19
Solyc10g051110.1.1	Tomato	plastid	57.47	41.42
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	47.45	38.79
HORVU5Hr1G074000.3	Barley	mitochondrion	46.69	36.06
VIT_10s0003g03090.t01	Wine grape	cytosol	16.82	35.6
VIT_06s0009g03780.t01	Wine grape	plastid	13.61	21.43
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	13.04	20.97

Protein Annotations

MapMan:1.1.5.2.2.2	EntrezGene:100262319	wikigene:100262319	MapMan:23.1.3.5.3	Gene3D:3.40.50.720	EMBL:AM426870
ProteinID:CAN75677	ProteinID:CAN75677.1	ProteinID:CBI32544	ProteinID:CBI32544.3	UniProt:D7TPX1	EMBL:FN596006
EntrezGene:LOC100262319	wikigene:LOC100262319	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194
PANTHER:PTHR14194:SF83	SUPFAM:SSF51735	UniParc:UPI0001982E65	ArrayExpress:VIT_03s0063g02020	EnsemblPlantsGene:VIT_03s0063g02020	EnsemblPlants:VIT_03s0063g02020.t01
RefSeq:XP_002284662	RefSeq:XP_002284662.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:5292065..5302176

Molecular Weight (calculated)

56675.9 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.250

Length

529 amino acids

Sequence
(BLAST)

001: MELRSLQSPT VTSIPKLNRS GGFIEKPFLC GQVLRLPSSR RCPDSRKLTV LEFRAQATGT TKFSFSTIGA IQDKADLKDE DLAFVAGATG RVGSRTVREL
101: LKLGFRVRAG VRTAQKAEAL IQSVKQMKLD VESASEGTQP VEKLEIVECD LEKRDQIGPA LGNASVVICC IGASEKEVFD ITGPYRIDYM ATKNLIDAAT
201: VAKVNHFILL TSLGTNKVGF PAAILNLFWG VLIWKRKAEE ALFASGLPYT IVRPGGMERP TDAYKETHNI TLSQEDTLFG GQVSNLQVAE LIAFMAKNRG
301: SSYCKVVEVI AETTAPLTPF GELLAKIPSQ RVDVSPKESD AADGPAPVPV VSGPPPSTPI EKGPPQGKAT AMSPLSPYIV YEDLKPPTSP TPTPSTSSST
401: ARAPDVDGIP AEPKSIPSVL EPLSTVLAKE AIQEEAKKTR PLSPYIVYDD LKPPTSPSPS APTVSLPSTL PMEGGSKIDN ISGNNTAQPP AADIPKDEQH
501: HVQAKPRPLS PFTMYEDLKP PTSPSPSQC

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.