CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007921_P001	Maize	plastid	65.32	81.9
Os10t0100300-01	Rice	nucleus, plastid	58.99	46.88
KRH24514	Soybean	plastid	41.52	39.05
TraesCS5D01G277900.1	Wheat	plastid	54.94	38.68
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	49.37	38.61
TraesCS5B01G270200.1	Wheat	plastid	54.68	38.03
KRH29515	Soybean	plastid	18.48	37.63
KRH24515	Soybean	plastid	48.86	36.55
VIT_03s0063g02020.t01	Wine grape	plastid	47.85	35.73
KRH29518	Soybean	vacuole	49.11	34.83
EES15131	Sorghum	plastid	24.81	34.63
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	54.94	33.54
HORVU5Hr1G074000.3	Barley	mitochondrion	55.19	31.82
AT3G18890.1	Thale cress	plastid	48.61	29.95
CDX92286	Canola	plastid	48.35	29.75
CDX99298	Canola	plastid	48.1	29.64
Bra022369.1-P	Field mustard	plastid	48.1	29.55
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	49.11	28.4
Solyc10g051110.1.1	Tomato	plastid	49.62	26.7
KXG37247	Sorghum	plastid	15.7	24.12
EER92259	Sorghum	plastid	16.96	19.88
EES17563	Sorghum	plastid	14.94	19.73

Protein Annotations

MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	Gene3D:3.40.50.720	UniProt:C5X6I5	EnsemblPlants:EER97808	ProteinID:EER97808
ProteinID:EER97808.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0098807	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460
PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	EnsemblPlantsGene:SORBI_3002G000500	SUPFAM:SSF51735	unigene:Sbi.3125	UniParc:UPI0001A83752
RefSeq:XP_002461287.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:129204..131594

Molecular Weight (calculated)

41940.8 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.175

Length

395 amino acids

Sequence
(BLAST)

001: MGMADTSIFS LSPPLLRLRL RMSHHPHTSS SSAIPPVPAA ASSTSSSPRP RRLLIKQQRS IIGNNHSSPT RQRSLLLSSS RASASASSSS SSSSSSVATA
101: TATATAPAQN ENEKDVVFVA GATGRVGSRA VRELIKLGFR VRAAVRNAQR ATSLVQSVQQ LKLEAQPELE LVECDLEKQA QEGIVSAIGN ASLVVCSIGA
201: SEKEILDVTG PYRIDYMATN KLVQAASAAK VEHFILVTSL GTNRIGFPAF LLNLFWGVLY WKRRAEEALI ASGIPYTIIR PGGMERPTDA FKETHNLVLA
301: PEDTYVGGQV SNLQVAELIG CMAANRRAAY CKIVEAVAET TAPLLPTEQL LSTIPSKREP PCSGPADDDE PGDDADPKPP QPPPAPAAAE ESQTT

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.