Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G277900.1 | Wheat | plastid | 91.73 | 92.87 |
| TraesCS5A01G269800.1 | Wheat | cytosol, extracellular, plastid | 92.61 | 81.3 |
| HORVU5Hr1G074000.3 | Barley | mitochondrion | 90.14 | 74.74 |
| Zm00001d007921_P001 | Maize | plastid | 35.04 | 63.17 |
| Os10t0100300-01 | Rice | nucleus, plastid | 54.4 | 62.17 |
| EER97808 | Sorghum | plastid | 38.03 | 54.68 |
| GSMUA_Achr8P04880_001 | Banana | endoplasmic reticulum, vacuole | 44.01 | 49.51 |
| VIT_03s0063g02020.t01 | Wine grape | plastid | 44.19 | 47.45 |
| KRH24515 | Soybean | plastid | 43.49 | 46.78 |
| KRH29518 | Soybean | vacuole | 42.78 | 43.63 |
| CDX92286 | Canola | plastid | 47.71 | 42.21 |
| CDX99298 | Canola | plastid | 47.54 | 42.12 |
| KRH24514 | Soybean | plastid | 30.99 | 41.9 |
| Bra022369.1-P | Field mustard | plastid | 47.36 | 41.84 |
| AT3G18890.1 | Thale cress | plastid | 45.95 | 40.72 |
| PGSC0003DMT400021326 | Potato | cytosol, peroxisome, plastid | 45.07 | 37.48 |
| KRH29515 | Soybean | plastid | 12.32 | 36.08 |
| TraesCS7B01G250100.1 | Wheat | mitochondrion, plastid | 17.78 | 35.44 |
| Solyc10g051110.1.1 | Tomato | plastid | 44.72 | 34.6 |
| TraesCS1B01G037100.1 | Wheat | plastid | 12.85 | 24.33 |
| TraesCS5B01G494600.1 | Wheat | plastid | 11.44 | 22.41 |
| TraesCS6B01G093300.1 | Wheat | plastid | 12.85 | 22.19 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G270200.1 | EnsemblPlantsGene:TraesCS5B01G270200 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR14194 |
| PANTHER:PTHR14194:SF83 | PFAM:PF13460 | SEG:seg | SUPFAM:SSF51735 | TIGR:cd05243 | MapMan:1.1.5.2.2.2 |
| MapMan:23.1.3.5.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:455746869..455749065
Molecular Weight (calculated)
57443.3 Da
IEP (calculated)
8.972
GRAVY (calculated)
-0.110
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKAAAVSL SAPLPWCRVG GSNGPLACSA SARRSRRCGY HHGAPLRSLA RPSSSARSFP AGRVYAMAAA ATAPVKEQDL VFVAGATGKV GSRTVRELIK
101: LGFRVRAAVR SKERASPLVQ SVERLELGEG SAPASRLELV ECDLEKQGEA GIKAAIGDAA LVVCSIGASE KEILDVTGPY RIDYVATANL VRAAAKAGVE
201: HFVLVTSLGT TRFGFPAALL NLFWGVLCWK KMAEEALVAS GVPYTIVRPG GMERPTDAYK ETHNLVVSPR DTYVGGLVSN LQVAELIACV AKNRRAAYCK
301: VVELVAETTA PLLPMEDLLA RVPSDPGRAP PPAPAAPAVV AEAPKESPPA AAAAPTPAAV PPAPAPAPAA SVAPPAAAAP PAAAPPPAAA PPAPAPVAAA
401: KAERPLSPYA AYEDLKPPSS PTPSFSSGTT GQAVKESPPA PAPAPAAPAP PPPAAPAASA KPRPLSPYAA YEGLKPPSSP TPSRSSSKKN DDGDSPSPPP
501: TAASPEAATS TTAEAAAAEP SSPLLDSNAN GAPATAAPTA DPGRPLSPYA RYEDLKPPTT PTPSAPKV
101: LGFRVRAAVR SKERASPLVQ SVERLELGEG SAPASRLELV ECDLEKQGEA GIKAAIGDAA LVVCSIGASE KEILDVTGPY RIDYVATANL VRAAAKAGVE
201: HFVLVTSLGT TRFGFPAALL NLFWGVLCWK KMAEEALVAS GVPYTIVRPG GMERPTDAYK ETHNLVVSPR DTYVGGLVSN LQVAELIACV AKNRRAAYCK
301: VVELVAETTA PLLPMEDLLA RVPSDPGRAP PPAPAAPAVV AEAPKESPPA AAAAPTPAAV PPAPAPAPAA SVAPPAAAAP PAAAPPPAAA PPAPAPVAAA
401: KAERPLSPYA AYEDLKPPSS PTPSFSSGTT GQAVKESPPA PAPAPAAPAP PPPAAPAASA KPRPLSPYAA YEGLKPPSSP TPSRSSSKKN DDGDSPSPPP
501: TAASPEAATS TTAEAAAAEP SSPLLDSNAN GAPATAAPTA DPGRPLSPYA RYEDLKPPTT PTPSAPKV
001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H
Arabidopsis Description
TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.