Factsheet for Os10t0100300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007921_P001	Maize	plastid	42.45	66.98
EER97808	Sorghum	plastid	46.88	58.99
TraesCS5D01G277900.1	Wheat	plastid	61.77	54.72
TraesCS5B01G270200.1	Wheat	plastid	62.17	54.4
GSMUA_Achr8P04880_001	Banana	endoplasmic reticulum, vacuole	50.91	50.1
KRH24515	Soybean	plastid	51.31	48.3
VIT_03s0063g02020.t01	Wine grape	plastid	50.5	47.45
TraesCS5A01G269800.1	Wheat	cytosol, extracellular, plastid	61.57	47.3
KRH29518	Soybean	vacuole	50.3	44.88
HORVU5Hr1G074000.3	Barley	mitochondrion	61.77	44.82
KRH24514	Soybean	plastid	36.02	42.62
CDX99298	Canola	plastid	50.3	39.0
AT3G18890.1	Thale cress	plastid	50.1	38.85
KRH29515	Soybean	plastid	15.09	38.66
CDX92286	Canola	plastid	49.9	38.63
Bra022369.1-P	Field mustard	plastid	49.3	38.1
PGSC0003DMT400021326	Potato	cytosol, peroxisome, plastid	50.1	36.46
Solyc10g051110.1.1	Tomato	plastid	49.9	33.79
Os06t0360300-01	Rice	plastid	19.11	32.65
Os03t0822200-01	Rice	extracellular, plasma membrane	11.47	22.18
Os05t0110300-01	Rice	extracellular	13.08	20.7
Os03t0355900-00	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.5.2.2.2	MapMan:23.1.3.5.3	Gene3D:3.40.50.720	EntrezGene:4347935	ProteinID:ABG65881.1	EMBL:AK065110
ProteinID:BAF25922.1	ProteinID:BAT09555.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009528	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009706
GO:GO:0015031	GO:GO:0016020	GO:GO:0098807	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os10g0100300
EnsemblPlants:Os10t0100300-01	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF83	UniProt:Q10A77	SUPFAM:SSF51735
UniParc:UPI0000DB4B65	RefSeq:XP_015612840.1	SEG:seg	:	:	:

Description

TIC62, Os-TIC26, OsTIC26NAD(P)-binding domain containing protein. (Os10t0100300-01)

Coordinates

chr10:-:46031..58278

Molecular Weight (calculated)

52204.6 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.255

Length

497 amino acids

Sequence
(BLAST)

001: MEQAAKATIS LSPPSYAGCC MAACPYRSTR HLRRGGGCSA RSISSLRHAP SARVYAAAAA AATPESKSTK ENDLVFIAGA TGKVGSRAVR EFIKLGFRVR
101: AGVRSAQRAS SLVQSVEQLK VDDDATSPAE RLEIVECDLE KQAQSDIVSA IGNAAIVVCS IGASEKDILD VTGPYRIDYM ATNNLVQAAT AAKVEHFILV
201: TSLGTNRIGF PAFLLNLFWG VLCWKRRAEE ALIGSGLPYT IVRPGGMERP TDAFKETHNL VVAVEDTYVG GLVSNLQVAE LIACIASNRR TAYCKVVEAI
301: AETTAPLLPT EDQLANIPSK RQPPPEPEVV QQGETPPKPI QQSQRPLSPY TAFVDLKPPS SPSPCPPSAA APAPTSTDTA AAGSSSTLNS SATGTPISVD
401: QPKQQQRPLS PYTRYEELKP PSSPSPTPPS AASSASVSAS PDTPPAAAAS SAALDSSANG TPITGDQLNQ QQSPLSPYTR YEELKPPSSP TPSTPKL

Best Arabidopsis Sequence Match ( AT3G18890.1 )
(BLAST)

001: MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE
101: LLKLGFRVRA GVRSAQRAGS LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI TGPYRIDYLA TKNLVDAATS
201: AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL
301: SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP KEDEAPPKEK NVKPRPLSPY ASYEDLKPPT SPIPNSTTSV
401: SPAKSKEVDA TQVPVEANVV PVPDSTSNVP VVEVKQVEEK KERPLSPYAR YENLKPPSSP SPTASSTRKS DSLSPGPTDS DTDKSSTVAK TVTETAVATS
501: VTETSVATSV PETAVATSVT ETAAPATSKM RPLSPYAIYA DLKPPTSPTP ASTGPKEAAS VEDNSELPGG NNDVLKTVDG NLNTIPPSTP EAVPVVSSAI
601: DTSLASGDNT AQPKPRPLSP YTMYADMKPP TSPLPSPVTN H

Arabidopsis Description

TIC62Protein TIC 62, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.