Factsheet for Os05t0110300-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 23159799
extracellular: 28232208

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035672_P001	Maize	peroxisome	33.12	84.55
Zm00001d011069_P001	Maize	plastid	79.3	83.56
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	67.52	83.14
TraesCS1D01G030600.1	Wheat	golgi	78.66	82.61
EES17563	Sorghum	plastid	78.03	81.94
TraesCS1B01G037100.1	Wheat	plastid	78.03	81.67
TraesCS1A01G030100.1	Wheat	plastid	77.71	81.61
KRG99976	Soybean	nucleus	64.33	79.22
Os03t0822200-01	Rice	extracellular, plasma membrane	63.06	77.04
HORVU1Hr1G004430.3	Barley	plastid	77.71	76.97
Solyc09g010930.2.1	Tomato	extracellular	62.42	76.86
PGSC0003DMT400022763	Potato	extracellular	64.65	68.12
Bra005175.1-P	Field mustard	plastid	67.83	66.15
CDY65254	Canola	plastid	68.15	66.05
Bra017165.1-P	Field mustard	plastid	68.79	65.85
AT2G37660.1	Thale cress	plastid	68.15	65.85
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	68.47	65.35
CDX93359	Canola	plastid	67.83	64.74
KRH49116	Soybean	nucleus	67.2	63.75
CDX91377	Canola	cytosol	51.59	57.86
CDX74941	Canola	plastid	42.04	45.83
Os03t0355900-00	Rice	cytosol	1.91	31.58
Os06t0360300-01	Rice	plastid	23.57	25.43
Os10t0100300-01	Rice	nucleus, plastid	20.7	13.08

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0P0WH35	ProteinID:BAS91912.1	ProteinID:BAS91913.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0016853	GO:GO:0042742
GO:GO:0048046	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os05g0110300	EnsemblPlants:Os05t0110300-01	PFAM:PF13460
PANTHER:PTHR14194	PANTHER:PTHR14194:SF61	SUPFAM:SSF51735	UniParc:UPI0003939078	SEG:seg	:

Description

Similar to NAD-dependent epimerase/dehydratase. (Os05t0110300-01);Similar to NAD-dependent epimerase/dehydratase. (Os05t0110300-02)

Coordinates

chr5:+:552043..561773

Molecular Weight (calculated)

33548.4 Da

IEP (calculated)

9.566

GRAVY (calculated)

-0.191

Length

314 amino acids

Sequence
(BLAST)

001: DSHSHSLRLL LIASPSPEKT TMTTIAARMP FAGPRLRPPC NLTASRPGPR RAGLAVVSAA AGGPLPTVLV TGAGGRTGQI VYKKLKERAD QFVGRGLVRT
101: EESKAKIGGA ADVFVGDIRD PASIAPAIDG IDALIILTSA VPKMKPGFDP SKGGRPEFYF EDGSYPEQVD WIGQRNQIDA AKSIGVKQVV LVGSMGGTDV
201: NHPLNKLGNA NILVWKRKAE QYLADSGLPY TIIRAGGLQD KDGGVRELLV GKDDEILKTE TKTITRADVA EVCLQALLFE EARFKAFDLA SKPEGEGVPT
301: TDFRALFSQV NSRF

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.