Factsheet for TraesCS1D01G030600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G037100.1	Wheat	plastid	97.99	97.67
TraesCS1A01G030100.1	Wheat	plastid	96.32	96.32
HORVU1Hr1G004430.3	Barley	plastid	95.32	89.91
Zm00001d035672_P001	Maize	peroxisome	35.45	86.18
Zm00001d011069_P001	Maize	plastid	84.95	85.23
EES17563	Sorghum	plastid	84.28	84.28
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	71.57	83.92
Solyc09g010930.2.1	Tomato	extracellular	67.56	79.22
KRG99976	Soybean	nucleus	67.22	78.82
Os05t0110300-01	Rice	extracellular	82.61	78.66
TraesCS5D01G495000.1	Wheat	golgi	65.22	76.77
PGSC0003DMT400022763	Potato	extracellular	71.57	71.81
Bra005175.1-P	Field mustard	plastid	73.24	68.01
CDY65254	Canola	plastid	73.24	67.59
Bra017165.1-P	Field mustard	plastid	73.58	67.07
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	73.58	66.87
AT2G37660.1	Thale cress	plastid	71.91	66.15
CDX93359	Canola	plastid	72.24	65.65
KRH49116	Soybean	nucleus	70.57	63.75
CDX91377	Canola	cytosol	55.85	59.64
CDX74941	Canola	plastid	46.49	48.26
TraesCS7D01G346000.1	Wheat	plastid	24.41	25.61
TraesCS4D01G124000.1	Wheat	plastid	26.42	24.16
TraesCS4D01G166200.1	Wheat	plastid	26.42	24.16
TraesCS5D01G277900.1	Wheat	plastid	24.75	13.19

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0042742	GO:GO:0048046	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194
PANTHER:PTHR14194:SF61	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS1D01G030600	EnsemblPlants:TraesCS1D01G030600.1	TIGR:cd05243	SEG:seg

Description

No Description!

Coordinates

chr1D:+:11966363..11968391

Molecular Weight (calculated)

31754.3 Da

IEP (calculated)

9.579

GRAVY (calculated)

-0.191

Length

299 amino acids

Sequence
(BLAST)

001: MTTAAAAATM RLSSPFKAPP LRPPCHRVLP SMRVPRRAGL AVSAAAAGSP PTVLVTGAGG RTGQIVYKKL KERADQFVAR GLVRTPDSKG KIGGGDDVFI
101: GDIRDPGSIA PAIDGIDALI ILTSGVPKMK PGFDPSKGGR PEFYFEEGSD PEQVDWIGQK NQIDAAKSIG VKQIVLVGSM GGTDINHPLN KLGNGNILVW
201: KRKAEQYLAD SGLPYTIIRA GGLQDKDGGV RELIVGKDDE ILKTETKTIA RADVAEVCIQ ALLFEEAKFK AFDLASKPEG EGTPTTDFKS VFAQIATRF

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.