CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99976	Soybean	nucleus	74.32	96.47
GSMUA_Achr6P15220_001	Banana	cytosol, peroxisome, plastid	64.05	83.14
Solyc09g010930.2.1	Tomato	extracellular	63.75	82.75
Zm00001d035672_P001	Maize	peroxisome	28.7	77.24
PGSC0003DMT400022763	Potato	extracellular	67.98	75.5
VIT_08s0007g00530.t01	Wine grape	extracellular, plastid	73.72	74.16
Zm00001d011069_P001	Maize	plastid	65.56	72.82
EES17563	Sorghum	plastid	64.65	71.57
TraesCS1B01G037100.1	Wheat	plastid	64.05	70.67
TraesCS1D01G030600.1	Wheat	golgi	63.75	70.57
TraesCS1A01G030100.1	Wheat	plastid	63.75	70.57
Bra005175.1-P	Field mustard	plastid	66.77	68.63
AT2G37660.1	Thale cress	plastid	66.16	67.38
Os05t0110300-01	Rice	extracellular	63.75	67.2
CDY65254	Canola	plastid	65.56	66.98
Bra017165.1-P	Field mustard	plastid	65.86	66.46
CDX93359	Canola	plastid	65.56	65.96
HORVU1Hr1G004430.3	Barley	plastid	63.14	65.93
CDX91377	Canola	cytosol	49.85	58.93
CDX74941	Canola	plastid	42.3	48.61
KRH07338	Soybean	plastid	24.47	24.32
KRH42344	Soybean	plastid	20.54	23.45
KRH66235	Soybean	plastid	24.77	23.16
KRH58466	Soybean	plastid	20.24	22.95
KRH29515	Soybean	plastid	7.55	12.89
KRH24515	Soybean	plastid	20.54	12.88
KRH24514	Soybean	plastid	16.31	12.86
KRH29518	Soybean	vacuole	19.94	11.85

Protein Annotations

EMBL:ACUP02004331	EMBL:BT097194	EnsemblPlants:KRH49116	EnsemblPlantsGene:GLYMA_07G133200	EntrezGene:100794855	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR14194	PANTHER:PTHR14194:SF61	PFAM:PF13460	ProteinID:KRH49116
ProteinID:KRH49116.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001B167B6	UniProt:C6THR8	MapMan:35.1

Description

hypothetical protein

Coordinates

chr7:-:15775833..15781386

Molecular Weight (calculated)

35672.8 Da

IEP (calculated)

9.095

GRAVY (calculated)

-0.115

Length

331 amino acids

Sequence
(BLAST)

001: MATRVPFVLC AATTSPNHCL KYCVVAPSLP LPVSSSSLSR HFLSLSFSSS FSSSLGLLPL SKKEGVKRVG RRFGVVAMAE SKSTVLVTGA GGRTGQIVYK
101: KLRERPNQYV ARGLVRTDES KQNIGAADDV IVGDIRDAES IVPAIQGIDA LIILTSAVPQ IKPGFDPTKG QRPEFYFEDG AYPEQVDWIG QKNQIDVAKA
201: AGVKHIVLVG SMGGTDLNHP LNSLGNGNIL VWKRKAEQYL ADSGIPYTII RAGGLQDKDG GLRELLVGKD DELLQTETRT ISRSDVAEVC IQALNFEEAK
301: FKAFDLASKP EGAGSATKDF KALFSQITTR F

Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)

001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF

Arabidopsis Description

Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.