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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 2
  • plastid 3
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
 plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 22892874 doi
EH Konozy, H Rogniaux, M Causse, M Faurobert
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG99976 Soybean nucleus 83.14 83.14
GSMUA_Achr6P15220_001 Banana cytosol, peroxisome, plastid 82.35 82.35
PGSC0003DMT400022763 Potato extracellular 96.08 82.21
Zm00001d035672_P001 Maize peroxisome 36.08 74.8
TraesCS1D01G030600.1 Wheat golgi 79.22 67.56
TraesCS1B01G037100.1 Wheat plastid 78.82 67.0
TraesCS1A01G030100.1 Wheat plastid 78.43 66.89
Zm00001d011069_P001 Maize plastid 77.65 66.44
EES17563 Sorghum plastid 76.86 65.55
Bra005175.1-P Field mustard plastid 82.75 65.53
VIT_08s0007g00530.t01 Wine grape extracellular, plastid 84.31 65.35
AT2G37660.1 Thale cress plastid 81.96 64.31
CDY65254 Canola plastid 81.57 64.2
KRH49116 Soybean nucleus 82.75 63.75
HORVU1Hr1G004430.3 Barley plastid 78.82 63.41
Bra017165.1-P Field mustard plastid 81.18 63.11
CDX93359 Canola plastid 80.78 62.61
Os05t0110300-01 Rice extracellular 76.86 62.42
CDX91377 Canola cytosol 66.67 60.71
CDX74941 Canola plastid 49.8 44.1
Solyc01g008920.2.1 Tomato plastid 30.98 24.23
Solyc02g070770.2.1 Tomato plastid 26.67 23.29
Solyc02g070760.2.1 Tomato plastid 24.71 21.43
Solyc10g051110.1.1 Tomato plastid 26.27 9.13
Protein Annotations
EnsemblPlants:Solyc09g010930.2.1EnsemblPlantsGene:Solyc09g010930.2Gene3D:3.40.50.720InterPro:NAD(P)-bd_domInterPro:NAD(P)-bd_dom_sfPANTHER:PTHR14194
PANTHER:PTHR14194:SF61PFAM:PF13460SUPFAM:SSF51735UniParc:UPI000276AF3BUniProt:K4CRB9MapMan:35.1
Description
No Description!
Coordinates
chr9:-:4264025..4269432
Molecular Weight (calculated)
27565.9 Da
IEP (calculated)
6.090
GRAVY (calculated)
-0.353
Length
255 amino acids
Sequence
(BLAST)
001: MADLNTSTVL VTGAGGRTGS IVYKKLKERS ETYTARGLVR TEESKQKVGG ADDVYIGDIR NIESLVPAIQ GIDALVILTS AVPKMKPGYD PTKGGRPEFY
101: FEDGANPEQV DWIGQKNQID AAKAAGVKRI VLVGSMGGTN PNHPLNSLGN GNILIWKRKA EQYLADSGIP YTIIRAGGLQ DKEGGIRELL VGKDDELLET
201: ETKTVARTDV AEVCIQALQY EEAKFKAFDL ASKPEGTGTP TKDFKALFAQ ISTRF
Best Arabidopsis Sequence Match ( AT2G37660.1 )
(BLAST)
001: MAMMTTTTTT FFHPLLPANT YKSGAVASSF VSVPRSSSLQ FRSLVSDSTS ICGPSKFTGK NRRVSVTVSA AATTEPLTVL VTGAGGRTGQ IVYKKLKERS
101: EQFVARGLVR TKESKEKING EDEVFIGDIR DTASIAPAVE GIDALVILTS AVPQMKPGFD PSKGGRPEFF FDDGAYPEQV DWIGQKNQID AAKAAGVKQI
201: VLVGSMGGTN INHPLNSIGN ANILVWKRKA EQYLADSGIP YTIIRAGGLQ DKDGGIRELL VGKDDELLET ETRTIARADV AEVCVQALQL EEAKFKALDL
301: ASKPEGTGTP TKDFKALFTQ VTTKF
Arabidopsis Description
Uncharacterized protein At2g37660, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80934]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.