CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	KRH69305	AT1G14340.1	21798944
AT2G34460.1	KRH10001	AT1G55190.1	21798944
AT2G34460.1	KRH23330	AT1G55190.1	21798944
AT2G34460.1	KRH44167	AT1G55190.1	21798944
AT2G34460.1	KRH47141	AT1G55190.1	21798944
AT2G34460.1	KRH10001	AT3G13720.1	21798944
AT2G34460.1	KRH23330	AT3G13720.1	21798944
AT2G34460.1	KRH44167	AT3G13720.1	21798944
AT2G34460.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42344	Soybean	plastid	96.92	97.59
VIT_10s0003g03090.t01	Wine grape	cytosol	71.58	83.6
AT2G34460.1	Thale cress	plastid	68.49	71.43
CDY43675	Canola	plastid	66.78	69.39
Solyc02g070770.2.1	Tomato	plastid	68.84	68.84
Solyc02g070760.2.1	Tomato	plastid	69.18	68.71
Bra021912.1-P	Field mustard	plastid	67.47	68.17
PGSC0003DMT400021415	Potato	plastid	68.15	68.15
TraesCS7D01G346000.1	Wheat	plastid	60.96	62.46
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	60.27	61.75
EES15131	Sorghum	plastid	59.59	61.48
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	59.59	61.05
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	59.59	61.05
Zm00001d031799_P001	Maize	plastid	58.9	60.78
Os06t0360300-01	Rice	plastid	59.59	59.79
GSMUA_Achr4P31210_001	Banana	plastid	27.4	45.45
KRG99976	Soybean	nucleus	22.6	25.88
KRH07338	Soybean	plastid	28.08	24.62
KRH66235	Soybean	plastid	27.4	22.6
KRH49116	Soybean	nucleus	22.95	20.24
KRH29515	Soybean	plastid	12.67	19.07
KRH24514	Soybean	plastid	25.34	17.62
KRH24515	Soybean	plastid	29.45	16.29
KRH29518	Soybean	vacuole	29.79	15.62

Protein Annotations

EMBL:ACUP02003263	EnsemblPlants:KRH58466	EnsemblPlantsGene:GLYMA_05G129900	EntrezGene:100792523	Gene3D:3.40.50.720	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0016020	GO:GO:0016021	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR15020	PANTHER:PTHR15020:SF11	PFAM:PF13460	ProteinID:KRH58466	ProteinID:KRH58466.1	SEG:seg
SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000233A86E	UniProt:I1K333	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:+:32291012..32297950

Molecular Weight (calculated)

31672.3 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.041

Length

292 amino acids

Sequence
(BLAST)

001: MSMAATLTAV RIPTFHQRHL KQHFTAPSSS SLRLLNLAKM EGSEISEQVV GEDLGAKKKV FVAGATGSTG KRIVEQLLAK GFAVKAGVRD IDKAKTTLSS
101: ANPSLQIVKA DVTEGSDKLA EAIGDDSEAV VCATGFRPGW DLLAPWKVDN FGTVNLVEAC RKRNVNRFIL ISSILVNGAA MGQLLNPAYI FLNVFGLTLV
201: AKLQAEKYIR KSGINYTIIR PGGLRNDPPT GNVVMEPEDT LYEGSISRDL VAEVAVEALA YPEAFYKVVE IVSRPDAPKR PYHDLFGSIR QQ

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.