Factsheet for TraesCS7D01G346000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34460.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT2G34460.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT2G34460.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT2G34460.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS3D01G106500.1	AT1G55190.1	21798944
AT2G34460.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT2G34460.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT2G34460.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT2G34460.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT2G34460.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT2G34460.1	TraesCS3D01G106500.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G083360.1	Barley	mitochondrion, plastid	96.84	96.84
TraesCS7B01G250100.1	Wheat	mitochondrion, plastid	96.84	96.84
TraesCS7A01G338800.1	Wheat	mitochondrion, plastid	96.49	96.49
EES15131	Sorghum	plastid	82.81	83.39
Os06t0360300-01	Rice	plastid	84.56	82.82
Zm00001d031799_P001	Maize	plastid	81.05	81.63
VIT_10s0003g03090.t01	Wine grape	cytosol	60.7	69.2
AT2G34460.1	Thale cress	plastid	64.21	65.36
CDY43675	Canola	plastid	61.75	62.63
KRH42344	Soybean	plastid	62.81	61.72
KRH58466	Soybean	plastid	62.46	60.96
Bra021912.1-P	Field mustard	plastid	61.75	60.9
Solyc02g070770.2.1	Tomato	plastid	61.05	59.59
PGSC0003DMT400021415	Potato	plastid	59.3	57.88
Solyc02g070760.2.1	Tomato	plastid	56.84	55.1
GSMUA_Achr4P31210_001	Banana	plastid	28.07	45.45
TraesCS5D01G495000.1	Wheat	golgi	24.21	27.17
TraesCS4D01G124000.1	Wheat	plastid	28.42	24.77
TraesCS4D01G166200.1	Wheat	plastid	28.42	24.77
TraesCS1D01G030600.1	Wheat	golgi	25.61	24.41
TraesCS5D01G277900.1	Wheat	plastid	36.14	18.36

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941
GO:GO:0010287	GO:GO:0016020	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR15020
PANTHER:PTHR15020:SF11	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS7D01G346000	EnsemblPlants:TraesCS7D01G346000.1	TIGR:cd05243	SEG:seg

Description

No Description!

Coordinates

chr7D:-:444377928..444379120

Molecular Weight (calculated)

30143.6 Da

IEP (calculated)

9.641

GRAVY (calculated)

0.085

Length

285 amino acids

Sequence
(BLAST)

001: MAGVFHAPTA RPRLPLVLAC LSPTTRKLHV TRPAASAMDE ASASAPGAKK TTTVFVAGST GKTGKRVVAK LLEKGFGVVA GTTDVGRARG SLPQDPNLQL
101: VRADVTEGAD KLAEAVRGVD AVVCATGFRR SFDPFAPWKV DNLGTVNLVE ACRKAGVTRF VLVSSILVNG AAMGQLLNPA YIVLNLFGLV LVAKLQAEKY
201: IRGSGINYTI VRPGGLTEQP PTGNIVMEPE DTLYEGSISR DQVAEVAVEA LLCPEESSYK VVEIVTRADA PSRPLKDMFA SIKQK

Best Arabidopsis Sequence Match ( AT2G34460.1 )
(BLAST)

001: MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV
101: TEGPDKLAEV IGDDSQAVIC ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL NLFGLTLVAK LQAEKYIKKS
201: GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ

Arabidopsis Description

Uncharacterized protein At2g34460, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H124]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.