Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g055200.1.1 | Tomato | extracellular | 54.63 | 53.39 |
| KRH67902 | Soybean | extracellular | 28.7 | 26.84 |
| KRH70036 | Soybean | extracellular | 28.24 | 26.41 |
| KRH70039 | Soybean | extracellular | 28.24 | 26.41 |
| KRH70037 | Soybean | extracellular | 28.24 | 26.07 |
| KRH70040 | Soybean | extracellular | 27.78 | 25.97 |
| PGSC0003DMT400007421 | Potato | cytosol | 23.61 | 23.39 |
| PGSC0003DMT400007343 | Potato | extracellular, mitochondrion, nucleus | 9.26 | 18.69 |
| PGSC0003DMT400071177 | Potato | cytosol, nucleus, peroxisome | 15.28 | 13.81 |
Protein Annotations
| EntrezGene:102606301 | Gene3D:3.90.730.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005615 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0033897 | GO:GO:0090305 | GO:GO:0090502 | InterPro:IPR036430 | UniProt:M1CJG3 | PFAM:PF00445 |
| EnsemblPlantsGene:PGSC0003DMG400026738 | PGSC:PGSC0003DMG400026738 | EnsemblPlants:PGSC0003DMT400068755 | ScanProsite:PS00530 | PANTHER:PTHR11240 | PANTHER:PTHR11240:SF36 |
| InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:Ribonuclease_T2_eukaryotic | SUPFAM:SSF55895 | SignalP:SignalP-noTM |
| UniParc:UPI0002957E8B | RefSeq:XP_006347247.1 | : | : | : | : |
Description
S protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026738]
Coordinates
chr00:-:3960010..3961100
Molecular Weight (calculated)
25028.2 Da
IEP (calculated)
8.466
GRAVY (calculated)
-0.306
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKSLLTSTL FIVLFSLSST YADFDKLQLV LTWPPSFCHA NSCQRIVPKN FTIHGLWPDK EGPQLLKYCK PKLKYNYFSD KMLNDLDKHW IQLKVDQASA
101: LKDQRAWKYQ YLKHGSCCQK IYNQNTYFSL ALHLKDRFDL LRTLQIHRIV PGSSYTFEEI VDAVKTVTQM DPDIKCTEGA PELYEIGICF TPNGDSLVGC
201: RQSETCDKTG KIFFRP
101: LKDQRAWKYQ YLKHGSCCQK IYNQNTYFSL ALHLKDRFDL LRTLQIHRIV PGSSYTFEEI VDAVKTVTQM DPDIKCTEGA PELYEIGICF TPNGDSLVGC
201: RQSETCDKTG KIFFRP
001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
Arabidopsis Description
RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.