Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068755 | Potato | extracellular | 53.39 | 54.63 |
| Solyc05g007950.2.1 | Tomato | extracellular | 27.15 | 26.09 |
| KRH67902 | Soybean | extracellular | 26.7 | 25.54 |
| Solyc05g007940.2.1 | Tomato | extracellular | 26.7 | 24.89 |
| Solyc04g005640.2.1 | Tomato | extracellular | 24.89 | 22.92 |
| Solyc05g013210.2.1 | Tomato | cytosol | 12.67 | 22.58 |
| KRH70036 | Soybean | extracellular | 23.08 | 22.08 |
| KRH70040 | Soybean | extracellular | 23.08 | 22.08 |
| KRH70039 | Soybean | extracellular | 22.62 | 21.64 |
| KRH70037 | Soybean | extracellular | 22.17 | 20.94 |
| Solyc09g020110.2.1 | Tomato | plastid | 23.98 | 20.38 |
| Solyc06g082890.2.1 | Tomato | extracellular, plasma membrane | 23.08 | 18.48 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | ProteinID:AIG63318.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0033897 | GO:GO:0090502 | InterPro:IPR036430 | UniProt:K4AVI8 |
| PFAM:PF00445 | ScanProsite:PS00530 | ScanProsite:PS00531 | PANTHER:PTHR11240 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf |
| InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic | SUPFAM:SSF55895 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g055200.1 |
| EnsemblPlants:Solyc01g055200.1.1 | UniParc:UPI0002763542 | : | : | : | : |
Description
Self-incompatibility ribonuclease [Source:UniProtKB/TrEMBL;Acc:K4AVI8]
Coordinates
chr1:-:51700660..51701422
Molecular Weight (calculated)
25906.2 Da
IEP (calculated)
8.547
GRAVY (calculated)
-0.412
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKSQLITAL FILFFCLSPI YGDFDYMQLV LTWPPSFCYP RGTCKRTSNN FMIHGLWPEK KGFRLEFCSG GKAYKKFELH DHIVNDLDHH WIKMKFTEQD
101: AKQKQPLWNH EYTRHGRCCF NLYDQNAYFL LAMRLKDKLD LVRTLRNHRI TPGTKHTFDE IKSAIKTVTN QVDPDIKCVK HINGVEELNE IGICYTPSAG
201: SFYPCRQSNT CDETGTAILF R
101: AKQKQPLWNH EYTRHGRCCF NLYDQNAYFL LAMRLKDKLD LVRTLRNHRI TPGTKHTFDE IKSAIKTVTN QVDPDIKCVK HINGVEELNE IGICYTPSAG
201: SFYPCRQSNT CDETGTAILF R
001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF
Arabidopsis Description
RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.