Factsheet for Solyc05g007950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
extracellular: 29876421

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g00450.t01	Wine grape	extracellular	29.57	72.34
VIT_01s0026g02520.t01	Wine grape	extracellular	67.83	69.03
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	39.13	67.67
GSMUA_Achr7P21030_001	Banana	extracellular	63.04	65.32
GSMUA_Achr5P23330_001	Banana	extracellular	63.48	64.32
Solyc05g007940.2.1	Tomato	extracellular	60.0	58.23
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	64.35	56.06
Solyc05g013210.2.1	Tomato	cytosol	28.7	53.23
Solyc04g005640.2.1	Tomato	extracellular	55.22	52.92
Solyc09g020110.2.1	Tomato	plastid	33.04	29.23
Solyc01g055200.1.1	Tomato	extracellular	26.09	27.15
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	30.0	25.0

Protein Annotations

PDB:1DIX	Gene3D:3.90.730.10	MapMan:35.1	ProteinID:CAB40353.1	ProteinID:CAD60451.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005618	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0030312	GO:GO:0033897
GO:GO:0090305	GO:GO:0090502	InterPro:IPR036430	UniProt:P80022	PFAM:PF00445	ScanProsite:PS00530
ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	UniProt:Q6A3R1	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g007950.2
EnsemblPlants:Solyc05g007950.2.1	TMHMM:TMhelix	UniParc:UPI000000076A	EMBL:X79337	SEG:seg	:

Description

Ribonuclease T2 [Source:UniProtKB/TrEMBL;Acc:Q6A3R1]

Coordinates

chr5:-:2373133..2374737

Molecular Weight (calculated)

25332.5 Da

IEP (calculated)

4.370

GRAVY (calculated)

-0.195

Length

230 amino acids

Sequence
(BLAST)

001: MASNSAFSLF LILLIITQCL SVLNAAKDFD FFYFVQQWPG SYCDTKQSCC YPTTGKPAAD FGIHGLWPNN NDGTYPSNCD PNSPYDQSQI SDLISSMQQN
101: WPTLACPSGS GSTFWSHEWE KHGTCAESVL TNQHAYFKKA LDLKNQIDLL SILQGADIHP DGESYDLVNI RNAIKSAIGY TPWIQCNVDQ SGNSQLYQVY
201: ICVDGSGSSL IECPIFPGGK CGTSIEFPTF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.