Factsheet for TraesCS3D01G392200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	89.75	89.75
TraesCS3B01G430200.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	89.05	89.05
HORVU3Hr1G089550.5	Barley	endoplasmic reticulum, extracellular, vacuole	87.63	87.63
Os01t0897300-01	Rice	extracellular	67.14	68.35
KXG33898	Sorghum	extracellular, plasma membrane	72.08	66.89
Zm00001d042511_P005	Maize	golgi, mitochondrion, plasma membrane	60.07	48.16
TraesCS3D01G392300.1	Wheat	extracellular	46.29	46.62
AT2G39780.1	Thale cress	extracellular	41.34	45.17
CDY60490	Canola	extracellular, plasma membrane, vacuole	40.64	44.92
GSMUA_Achr7P23750_001	Banana	mitochondrion	45.94	43.33
Bra032671.1-P	Field mustard	extracellular	40.28	43.02
CDY39709	Canola	extracellular	40.28	43.02
KRH47963	Soybean	nucleus	39.93	41.85
Solyc09g020110.2.1	Tomato	plastid	37.81	41.15
KRH06524	Soybean	extracellular	38.16	40.15
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	37.81	38.77
VIT_00s1339g00010.t01	Wine grape	cytosol	12.72	34.62
TraesCS2D01G260000.1	Wheat	extracellular	26.15	32.17
TraesCS6D01G320200.1	Wheat	extracellular	25.44	31.58
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	26.15	30.96
TraesCS2D01G163300.1	Wheat	extracellular	26.15	30.71
TraesCS2D01G163100.1	Wheat	extracellular	24.73	30.04
TraesCS2D01G163200.1	Wheat	extracellular	25.09	29.46
TraesCS1D01G149800.1	Wheat	extracellular	20.85	24.08
TraesCS1D01G149700.1	Wheat	endoplasmic reticulum, extracellular	18.02	20.24

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF37	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3D01G392200	EnsemblPlants:TraesCS3D01G392200.1	TIGR:cd01061	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:507446486..507448182

Molecular Weight (calculated)

32128.4 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.360

Length

283 amino acids

Sequence
(BLAST)

001: MDRTRRGRRL LVSLCFLCLA VLLPGALLAS PAAGRKRRQA GFDHYVLALQ WPGTVCRQTN HCCSSNGCCR SNPLNWFTIH GLWPQYSYGG WPSCCRPTTT
101: FNMNKIAMLK PILEKYWPSL YCGDTSTCFG GRGPFWAHEW ATHGTCGYPE IQDEYDYFST ALYLYSKYNV TKALRKAHIY PRNGRKYAVA HIVDAIDHAF
201: GRLPHLVCKN GSVQELRLCF HKDYQPRDCG SEDDEAWSSS RRSHCPRYVT LPQSGTYQQS LVSLGVLHLI TKNADTELLS LKS

Best Arabidopsis Sequence Match ( AT2G39780.1 )
(BLAST)

001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL

Arabidopsis Description

RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.