Factsheet for TraesCS2D01G163300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G157400.1	Wheat	extracellular	98.76	98.76
TraesCS2B01G182900.1	Wheat	extracellular	97.1	97.5
HORVU2Hr1G028430.1	Barley	extracellular	94.61	95.0
TraesCS2D01G163200.1	Wheat	extracellular	86.72	86.72
Os07t0630400-01	Rice	extracellular	67.22	63.28
EER97591	Sorghum	extracellular	63.9	61.35
Zm00001d022228_P001	Maize	extracellular	63.07	58.69
TraesCS2D01G163100.1	Wheat	extracellular	54.36	56.22
TraesCS6D01G320200.1	Wheat	extracellular	43.57	46.05
TraesCS2D01G260000.1	Wheat	extracellular	41.91	43.91
TraesCS1D01G149800.1	Wheat	extracellular	28.63	28.16
TraesCS3D01G392300.1	Wheat	extracellular	30.71	26.33
TraesCS3D01G392200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	30.71	26.15
TraesCS1D01G149700.1	Wheat	endoplasmic reticulum, extracellular	26.97	25.79

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF18	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G163300
EnsemblPlants:TraesCS2D01G163300.1	TIGR:cd01061	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:107693886..107694762

Molecular Weight (calculated)

26871.1 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.220

Length

241 amino acids

Sequence
(BLAST)

001: MKLVVVLSAL LLLSLVAVSS AEEFDFFYLV QQWPGSFCDT KKGCCFPDTG KPATDFGIHG LWPNYAKCKT RGELDGALEM VTKRKKKCWP ENCNSERLKL
101: WEIKDLVTEL DANWPTLACK GGKSIEFWTH EWEKHGTCSN LDQHGYFATA LGFKARHNLT GILADAGIVP SDSETYFLSS IRDAIKQGTG FTANLECNRG
201: VAGETQLFQV YQCIDRAGEN LIDCPLPMQG NCKDRVQLPA F

Best Arabidopsis Sequence Match ( AT1G14210.1 )
(BLAST)

001: MRGIIIVSLL ILQSLVVSSS QTEPDFNFFY WVNYWPGAIC DSQKGCCPPT KGNTASDFII HGLWPQFNNG TWPAFCDQTN LFDISKISDL VCQMEKKWTE
101: WGVWACPSNE TNLWEHEWNK HGTCVQSIFD QHSYFRTNLK FKHKVHLLNI LIQKGIKPND GFYSLDEIKN AIKCAIGFAP GIECNEDVKG NKQLFQIYIC
201: LDNYAKEFVE CPYVPDKSCA SKIKFPSLPE RDSLNESLSV MSSVSTT

Arabidopsis Description

Ribonuclease T2 family protein [Source:UniProtKB/TrEMBL;Acc:F4HUG9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.